Hb_039946_060

Information

Type transcription factor
Description TF Family: ERF
Location Contig39946: 42419-43258
Sequence    

Annotation

kegg
ID rcu:RCOM_1050490
description Transcriptional factor TINY, putative
nr
ID XP_012076774.1
description PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
swissprot
ID Q9LYD3
description Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1
trembl
ID A0A067KC06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07297 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcriptional factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039946_060 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
2 Hb_001427_100 0.0627107931 - - acc synthase, putative [Ricinus communis]
3 Hb_005741_030 0.0889783809 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
4 Hb_001405_170 0.0927073378 - - aspartyl protease family protein [Populus trichocarpa]
5 Hb_000020_210 0.0948550085 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
6 Hb_000012_350 0.0967164888 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
7 Hb_003054_070 0.0986256122 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
8 Hb_001408_080 0.0989275677 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
9 Hb_010164_030 0.1009524785 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
10 Hb_000849_030 0.1028534754 - - PREDICTED: fimbrin-2 [Jatropha curcas]
11 Hb_009222_040 0.1035425619 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
12 Hb_001638_340 0.1040144349 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005111_020 0.1056453195 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
14 Hb_001477_060 0.1064791092 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
15 Hb_002053_190 0.1094013153 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
16 Hb_036520_030 0.1106658205 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
17 Hb_000749_290 0.1124586517 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
18 Hb_043630_030 0.1136439402 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
19 Hb_001110_060 0.1143336819 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
20 Hb_103225_030 0.1146459713 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_039946_060 Hb_039946_060 Hb_001427_100 Hb_001427_100 Hb_039946_060--Hb_001427_100 Hb_005741_030 Hb_005741_030 Hb_039946_060--Hb_005741_030 Hb_001405_170 Hb_001405_170 Hb_039946_060--Hb_001405_170 Hb_000020_210 Hb_000020_210 Hb_039946_060--Hb_000020_210 Hb_000012_350 Hb_000012_350 Hb_039946_060--Hb_000012_350 Hb_003054_070 Hb_003054_070 Hb_039946_060--Hb_003054_070 Hb_001408_080 Hb_001408_080 Hb_001427_100--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001427_100--Hb_005111_020 Hb_010164_030 Hb_010164_030 Hb_001427_100--Hb_010164_030 Hb_001427_100--Hb_000020_210 Hb_001427_100--Hb_000012_350 Hb_103225_030 Hb_103225_030 Hb_005741_030--Hb_103225_030 Hb_005741_030--Hb_001408_080 Hb_005741_030--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_005741_030--Hb_036520_030 Hb_001541_210 Hb_001541_210 Hb_005741_030--Hb_001541_210 Hb_002053_190 Hb_002053_190 Hb_001405_170--Hb_002053_190 Hb_002960_030 Hb_002960_030 Hb_001405_170--Hb_002960_030 Hb_081864_010 Hb_081864_010 Hb_001405_170--Hb_081864_010 Hb_001405_170--Hb_001541_210 Hb_009771_040 Hb_009771_040 Hb_001405_170--Hb_009771_040 Hb_002168_070 Hb_002168_070 Hb_001405_170--Hb_002168_070 Hb_009222_040 Hb_009222_040 Hb_000020_210--Hb_009222_040 Hb_000020_210--Hb_005111_020 Hb_000020_210--Hb_001405_170 Hb_122951_010 Hb_122951_010 Hb_000020_210--Hb_122951_010 Hb_001794_040 Hb_001794_040 Hb_000012_350--Hb_001794_040 Hb_011574_020 Hb_011574_020 Hb_000012_350--Hb_011574_020 Hb_000012_350--Hb_010164_030 Hb_020738_010 Hb_020738_010 Hb_000012_350--Hb_020738_010 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020 Hb_003054_070--Hb_010164_030 Hb_001117_050 Hb_001117_050 Hb_003054_070--Hb_001117_050 Hb_003054_070--Hb_000012_350 Hb_008221_200 Hb_008221_200 Hb_003054_070--Hb_008221_200 Hb_003054_070--Hb_001427_100 Hb_147006_010 Hb_147006_010 Hb_003054_070--Hb_147006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0275373 3.76964 5.34443 12.3193 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0632876 0.0995321 0 0.241329 5.01847

CAGE analysis