Hb_001541_210

Information

Type -
Description -
Location Contig1541: 193929-194252
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19020g
description POPTRDRAFT_720351; hypothetical protein
nr
ID XP_002312672.1
description hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P9J5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s19020g PE=2 SV=1
Gene Ontology
ID GO:0005634
description pgps d10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13296: 193839-193964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_210 0.0 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
2 Hb_001405_170 0.0856002438 - - aspartyl protease family protein [Populus trichocarpa]
3 Hb_002890_330 0.086160999 - - caspase, putative [Ricinus communis]
4 Hb_002053_190 0.0865691951 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
5 Hb_002960_030 0.0884263871 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
6 Hb_005741_030 0.0886607115 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
7 Hb_002043_070 0.0936083625 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
8 Hb_005675_070 0.0961021109 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
9 Hb_003893_130 0.0961801904 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_003399_110 0.0993457653 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001427_100 0.1089345895 - - acc synthase, putative [Ricinus communis]
12 Hb_005211_210 0.1096587699 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
13 Hb_000983_130 0.1135345173 - - transcription factor, putative [Ricinus communis]
14 Hb_015934_090 0.1135498971 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
15 Hb_009222_040 0.1156307178 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
16 Hb_039946_060 0.1165274875 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
17 Hb_002168_070 0.1170875898 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
18 Hb_103225_030 0.1175347966 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
19 Hb_158189_010 0.1194668639 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
20 Hb_001366_300 0.11966074 - - GERMIN-LIKE protein 10 [Populus trichocarpa]

Gene co-expression network

sample Hb_001541_210 Hb_001541_210 Hb_001405_170 Hb_001405_170 Hb_001541_210--Hb_001405_170 Hb_002890_330 Hb_002890_330 Hb_001541_210--Hb_002890_330 Hb_002053_190 Hb_002053_190 Hb_001541_210--Hb_002053_190 Hb_002960_030 Hb_002960_030 Hb_001541_210--Hb_002960_030 Hb_005741_030 Hb_005741_030 Hb_001541_210--Hb_005741_030 Hb_002043_070 Hb_002043_070 Hb_001541_210--Hb_002043_070 Hb_001405_170--Hb_002053_190 Hb_001405_170--Hb_002960_030 Hb_081864_010 Hb_081864_010 Hb_001405_170--Hb_081864_010 Hb_009771_040 Hb_009771_040 Hb_001405_170--Hb_009771_040 Hb_002168_070 Hb_002168_070 Hb_001405_170--Hb_002168_070 Hb_002890_330--Hb_002053_190 Hb_002890_330--Hb_002043_070 Hb_002890_330--Hb_002960_030 Hb_002890_330--Hb_001405_170 Hb_009222_040 Hb_009222_040 Hb_002890_330--Hb_009222_040 Hb_002053_190--Hb_002043_070 Hb_002053_190--Hb_002960_030 Hb_002053_190--Hb_002168_070 Hb_002534_070 Hb_002534_070 Hb_002960_030--Hb_002534_070 Hb_000983_130 Hb_000983_130 Hb_002960_030--Hb_000983_130 Hb_103225_030 Hb_103225_030 Hb_005741_030--Hb_103225_030 Hb_001408_080 Hb_001408_080 Hb_005741_030--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_005741_030--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_005741_030--Hb_036520_030 Hb_039946_060 Hb_039946_060 Hb_005741_030--Hb_039946_060 Hb_002043_070--Hb_002168_070 Hb_005211_210 Hb_005211_210 Hb_002043_070--Hb_005211_210 Hb_000434_060 Hb_000434_060 Hb_002043_070--Hb_000434_060 Hb_002043_070--Hb_009771_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 22.39 20.6269 64.3495 0.759198 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.360914 0.668283 33.8335

CAGE analysis