Hb_103225_030

Information

Type transcription factor
Description TF Family: Orphans
Location Contig103225: 64598-65011
Sequence    

Annotation

kegg
ID rcu:RCOM_1549750
description DNA binding protein, putative
nr
ID XP_002515724.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LJB7
description B-box zinc finger protein 32 OS=Arabidopsis thaliana GN=BBX32 PE=1 SV=1
trembl
ID B9RPQ5
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1549750 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103225_030 0.0 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
2 Hb_005741_030 0.0588784194 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
3 Hb_003023_030 0.0756458002 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
4 Hb_001408_080 0.0862584064 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
5 Hb_002534_070 0.0884560589 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
6 Hb_002762_100 0.0907424409 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000849_030 0.0948749127 - - PREDICTED: fimbrin-2 [Jatropha curcas]
8 Hb_002960_030 0.0991373694 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
9 Hb_003032_110 0.1018477231 - - -
10 Hb_002186_110 0.1043526747 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
11 Hb_000000_260 0.1065004333 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
12 Hb_007101_070 0.1070330277 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
13 Hb_001110_060 0.108490547 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
14 Hb_002890_330 0.1101013005 - - caspase, putative [Ricinus communis]
15 Hb_036520_030 0.1103191839 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
16 Hb_039946_060 0.1146459713 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
17 Hb_000085_410 0.1146808575 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
18 Hb_004607_060 0.1150833789 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
19 Hb_001427_100 0.1164391378 - - acc synthase, putative [Ricinus communis]
20 Hb_002053_190 0.1167930042 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_103225_030 Hb_103225_030 Hb_005741_030 Hb_005741_030 Hb_103225_030--Hb_005741_030 Hb_003023_030 Hb_003023_030 Hb_103225_030--Hb_003023_030 Hb_001408_080 Hb_001408_080 Hb_103225_030--Hb_001408_080 Hb_002534_070 Hb_002534_070 Hb_103225_030--Hb_002534_070 Hb_002762_100 Hb_002762_100 Hb_103225_030--Hb_002762_100 Hb_000849_030 Hb_000849_030 Hb_103225_030--Hb_000849_030 Hb_005741_030--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_005741_030--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_005741_030--Hb_036520_030 Hb_001541_210 Hb_001541_210 Hb_005741_030--Hb_001541_210 Hb_039946_060 Hb_039946_060 Hb_005741_030--Hb_039946_060 Hb_003023_030--Hb_002534_070 Hb_000120_560 Hb_000120_560 Hb_003023_030--Hb_000120_560 Hb_002960_030 Hb_002960_030 Hb_003023_030--Hb_002960_030 Hb_128216_010 Hb_128216_010 Hb_003023_030--Hb_128216_010 Hb_000646_040 Hb_000646_040 Hb_003023_030--Hb_000646_040 Hb_001110_060 Hb_001110_060 Hb_001408_080--Hb_001110_060 Hb_001408_080--Hb_000849_030 Hb_001408_080--Hb_001427_100 Hb_005111_020 Hb_005111_020 Hb_001408_080--Hb_005111_020 Hb_012132_050 Hb_012132_050 Hb_001408_080--Hb_012132_050 Hb_001408_080--Hb_036520_030 Hb_002534_070--Hb_002960_030 Hb_004450_090 Hb_004450_090 Hb_002534_070--Hb_004450_090 Hb_002534_070--Hb_000646_040 Hb_080601_010 Hb_080601_010 Hb_002534_070--Hb_080601_010 Hb_002762_100--Hb_005741_030 Hb_002762_100--Hb_000849_030 Hb_002890_330 Hb_002890_330 Hb_002762_100--Hb_002890_330 Hb_081864_010 Hb_081864_010 Hb_002762_100--Hb_081864_010 Hb_000020_210 Hb_000020_210 Hb_002762_100--Hb_000020_210 Hb_003466_010 Hb_003466_010 Hb_000849_030--Hb_003466_010 Hb_000849_030--Hb_036520_030 Hb_122951_010 Hb_122951_010 Hb_000849_030--Hb_122951_010 Hb_000849_030--Hb_001427_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.26494 79.7984 75.8055 307.789 1.38272 1.05513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.746817 0.293294 0.237155 1.74837 91.2343

CAGE analysis