Hb_080601_010

Information

Type -
Description -
Location Contig80601: 103-1194
Sequence    

Annotation

kegg
ID rcu:RCOM_0821630
description hypothetical protein
nr
ID ADR30789.1
description metallothionein 3-like protein [Hevea brasiliensis]
swissprot
ID Q96386
description Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1
trembl
ID I1SN86
description Metallothionein 3-like protein OS=Hevea brasiliensis GN=MT3L PE=2 SV=1
Gene Ontology
ID GO:0005622
description metallothionein-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59047: 164-1245
cDNA
(Sanger)
(ID:Location)		 015_L14.ab1: 165-1155 , 038_N11.ab1: 164-1175 , 045_O08.ab1: 165-1155

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080601_010 0.0 - - metallothionein 3-like protein [Hevea brasiliensis]
2 Hb_002534_070 0.0974645948 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
3 Hb_003023_030 0.1017790594 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
4 Hb_000030_230 0.1062527805 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
5 Hb_004450_090 0.1066249779 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
6 Hb_002186_170 0.1095062056 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
7 Hb_000000_260 0.1154248462 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
8 Hb_061783_010 0.1155135012 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
9 Hb_002170_010 0.1157623679 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
10 Hb_003582_030 0.1157997023 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
11 Hb_004102_200 0.1182072279 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
12 Hb_000227_350 0.119320289 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
13 Hb_103225_030 0.1210190423 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
14 Hb_000646_040 0.1244634027 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
15 Hb_007545_220 0.1251327179 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
16 Hb_128216_010 0.1286736357 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
17 Hb_017700_030 0.1295790583 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
18 Hb_000317_170 0.1298960093 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
19 Hb_002960_030 0.13142108 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
20 Hb_000087_190 0.1321449621 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]

Gene co-expression network

sample Hb_080601_010 Hb_080601_010 Hb_002534_070 Hb_002534_070 Hb_080601_010--Hb_002534_070 Hb_003023_030 Hb_003023_030 Hb_080601_010--Hb_003023_030 Hb_000030_230 Hb_000030_230 Hb_080601_010--Hb_000030_230 Hb_004450_090 Hb_004450_090 Hb_080601_010--Hb_004450_090 Hb_002186_170 Hb_002186_170 Hb_080601_010--Hb_002186_170 Hb_000000_260 Hb_000000_260 Hb_080601_010--Hb_000000_260 Hb_002534_070--Hb_003023_030 Hb_002960_030 Hb_002960_030 Hb_002534_070--Hb_002960_030 Hb_002534_070--Hb_004450_090 Hb_103225_030 Hb_103225_030 Hb_002534_070--Hb_103225_030 Hb_000646_040 Hb_000646_040 Hb_002534_070--Hb_000646_040 Hb_003023_030--Hb_103225_030 Hb_000120_560 Hb_000120_560 Hb_003023_030--Hb_000120_560 Hb_003023_030--Hb_002960_030 Hb_128216_010 Hb_128216_010 Hb_003023_030--Hb_128216_010 Hb_003023_030--Hb_000646_040 Hb_000307_060 Hb_000307_060 Hb_000030_230--Hb_000307_060 Hb_003582_030 Hb_003582_030 Hb_000030_230--Hb_003582_030 Hb_000317_170 Hb_000317_170 Hb_000030_230--Hb_000317_170 Hb_000087_190 Hb_000087_190 Hb_000030_230--Hb_000087_190 Hb_000030_230--Hb_000000_260 Hb_002186_110 Hb_002186_110 Hb_000030_230--Hb_002186_110 Hb_000983_130 Hb_000983_130 Hb_004450_090--Hb_000983_130 Hb_061783_010 Hb_061783_010 Hb_004450_090--Hb_061783_010 Hb_004102_200 Hb_004102_200 Hb_004450_090--Hb_004102_200 Hb_029238_040 Hb_029238_040 Hb_004450_090--Hb_029238_040 Hb_004450_090--Hb_000000_260 Hb_000175_370 Hb_000175_370 Hb_002186_170--Hb_000175_370 Hb_000098_230 Hb_000098_230 Hb_002186_170--Hb_000098_230 Hb_000422_060 Hb_000422_060 Hb_002186_170--Hb_000422_060 Hb_001541_170 Hb_001541_170 Hb_002186_170--Hb_001541_170 Hb_002186_170--Hb_003582_030 Hb_002186_170--Hb_000646_040 Hb_000000_260--Hb_000317_170 Hb_029791_010 Hb_029791_010 Hb_000000_260--Hb_029791_010 Hb_001680_050 Hb_001680_050 Hb_000000_260--Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_000000_260--Hb_007579_030 Hb_000000_260--Hb_000983_130 Hb_152914_010 Hb_152914_010 Hb_000000_260--Hb_152914_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.0926 753.623 260.753 1980.73 13.1195 12.8726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.764 3.40397 0.138486 7.98536 515.493

CAGE analysis