Hb_029791_010

Information

Type -
Description -
Location Contig29791: 42440-45767
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17480g
description POPTRDRAFT_1100193; hypothetical protein
nr
ID XP_002320566.2
description hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IB16
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17480g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31161: 41991-53508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029791_010 0.0 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
2 Hb_000000_260 0.0688231067 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
3 Hb_180980_010 0.0745546225 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
4 Hb_000317_170 0.080470574 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
5 Hb_001936_120 0.0840661764 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
6 Hb_133492_010 0.0937780774 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000599_160 0.0949675485 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
8 Hb_002960_030 0.0989431957 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
9 Hb_004450_090 0.1014673575 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
10 Hb_000983_130 0.101523268 - - transcription factor, putative [Ricinus communis]
11 Hb_152914_010 0.1082102347 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
12 Hb_000457_120 0.1091053201 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
13 Hb_001405_170 0.110012789 - - aspartyl protease family protein [Populus trichocarpa]
14 Hb_000137_050 0.1108557587 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000020_200 0.1116350502 - - hypothetical protein EUGRSUZ_B00411 [Eucalyptus grandis]
16 Hb_000030_230 0.111679715 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
17 Hb_000864_050 0.1123404317 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000856_030 0.1135752318 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000928_200 0.1136215928 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
20 Hb_036520_030 0.1139732059 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]

Gene co-expression network

sample Hb_029791_010 Hb_029791_010 Hb_000000_260 Hb_000000_260 Hb_029791_010--Hb_000000_260 Hb_180980_010 Hb_180980_010 Hb_029791_010--Hb_180980_010 Hb_000317_170 Hb_000317_170 Hb_029791_010--Hb_000317_170 Hb_001936_120 Hb_001936_120 Hb_029791_010--Hb_001936_120 Hb_133492_010 Hb_133492_010 Hb_029791_010--Hb_133492_010 Hb_000599_160 Hb_000599_160 Hb_029791_010--Hb_000599_160 Hb_000000_260--Hb_000317_170 Hb_001680_050 Hb_001680_050 Hb_000000_260--Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_000000_260--Hb_007579_030 Hb_000983_130 Hb_000983_130 Hb_000000_260--Hb_000983_130 Hb_152914_010 Hb_152914_010 Hb_000000_260--Hb_152914_010 Hb_180980_010--Hb_133492_010 Hb_000197_260 Hb_000197_260 Hb_180980_010--Hb_000197_260 Hb_180980_010--Hb_000599_160 Hb_180980_010--Hb_000317_170 Hb_000137_050 Hb_000137_050 Hb_180980_010--Hb_000137_050 Hb_000317_170--Hb_001680_050 Hb_000856_030 Hb_000856_030 Hb_000317_170--Hb_000856_030 Hb_000307_060 Hb_000307_060 Hb_000317_170--Hb_000307_060 Hb_000317_170--Hb_000599_160 Hb_036520_030 Hb_036520_030 Hb_001936_120--Hb_036520_030 Hb_005305_040 Hb_005305_040 Hb_001936_120--Hb_005305_040 Hb_000358_060 Hb_000358_060 Hb_001936_120--Hb_000358_060 Hb_011381_050 Hb_011381_050 Hb_001936_120--Hb_011381_050 Hb_002388_070 Hb_002388_070 Hb_001936_120--Hb_002388_070 Hb_000864_050 Hb_000864_050 Hb_133492_010--Hb_000864_050 Hb_004625_020 Hb_004625_020 Hb_133492_010--Hb_004625_020 Hb_002171_050 Hb_002171_050 Hb_133492_010--Hb_002171_050 Hb_004917_020 Hb_004917_020 Hb_133492_010--Hb_004917_020 Hb_000599_160--Hb_000307_060 Hb_000599_160--Hb_000864_050 Hb_007545_220 Hb_007545_220 Hb_000599_160--Hb_007545_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.71493 1.63591 10.2688 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0612858 0.0481934 0 0.389203 4.09148

CAGE analysis