Hb_000137_050

Information

Type -
Description -
Location Contig137: 77186-84434
Sequence    

Annotation

kegg
ID rcu:RCOM_1626720
description hypothetical protein
nr
ID XP_002527253.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SMN4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1626720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10260: 79015-80220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000137_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_152914_010 0.0739740322 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
3 Hb_000856_030 0.0830178475 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000197_260 0.0859254164 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
5 Hb_004917_020 0.0883421099 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
6 Hb_180980_010 0.0938782687 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
7 Hb_000317_170 0.0967019309 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
8 Hb_133492_010 0.0997581229 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001279_400 0.1005337122 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
10 Hb_000087_190 0.1009605807 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
11 Hb_004625_020 0.1042948795 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
12 Hb_005183_070 0.1083109545 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
13 Hb_001936_120 0.1089344218 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
14 Hb_002171_050 0.1102451778 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
15 Hb_029791_010 0.1108557587 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
16 Hb_000368_040 0.1110744736 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_007101_070 0.111132863 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
18 Hb_001680_050 0.1113924863 - - -
19 Hb_002388_070 0.1125237462 - - ring finger protein, putative [Ricinus communis]
20 Hb_000000_260 0.112956423 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000137_050 Hb_000137_050 Hb_152914_010 Hb_152914_010 Hb_000137_050--Hb_152914_010 Hb_000856_030 Hb_000856_030 Hb_000137_050--Hb_000856_030 Hb_000197_260 Hb_000197_260 Hb_000137_050--Hb_000197_260 Hb_004917_020 Hb_004917_020 Hb_000137_050--Hb_004917_020 Hb_180980_010 Hb_180980_010 Hb_000137_050--Hb_180980_010 Hb_000317_170 Hb_000317_170 Hb_000137_050--Hb_000317_170 Hb_152914_010--Hb_000197_260 Hb_007579_030 Hb_007579_030 Hb_152914_010--Hb_007579_030 Hb_000000_260 Hb_000000_260 Hb_152914_010--Hb_000000_260 Hb_002186_110 Hb_002186_110 Hb_152914_010--Hb_002186_110 Hb_152914_010--Hb_180980_010 Hb_000368_040 Hb_000368_040 Hb_000856_030--Hb_000368_040 Hb_000856_030--Hb_000317_170 Hb_001680_050 Hb_001680_050 Hb_000856_030--Hb_001680_050 Hb_000856_030--Hb_007579_030 Hb_000856_030--Hb_000197_260 Hb_005183_070 Hb_005183_070 Hb_000197_260--Hb_005183_070 Hb_029665_010 Hb_029665_010 Hb_000197_260--Hb_029665_010 Hb_000197_260--Hb_001680_050 Hb_000197_260--Hb_002186_110 Hb_000197_260--Hb_007579_030 Hb_002973_050 Hb_002973_050 Hb_004917_020--Hb_002973_050 Hb_001279_400 Hb_001279_400 Hb_004917_020--Hb_001279_400 Hb_133974_010 Hb_133974_010 Hb_004917_020--Hb_133974_010 Hb_002171_050 Hb_002171_050 Hb_004917_020--Hb_002171_050 Hb_002835_070 Hb_002835_070 Hb_004917_020--Hb_002835_070 Hb_133492_010 Hb_133492_010 Hb_180980_010--Hb_133492_010 Hb_029791_010 Hb_029791_010 Hb_180980_010--Hb_029791_010 Hb_180980_010--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_180980_010--Hb_000599_160 Hb_180980_010--Hb_000317_170 Hb_000317_170--Hb_000000_260 Hb_000317_170--Hb_001680_050 Hb_000307_060 Hb_000307_060 Hb_000317_170--Hb_000307_060 Hb_000317_170--Hb_029791_010 Hb_000317_170--Hb_000599_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.797825 21.5364 12.27 97.1352 1.10658 0.840874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.01243 38.7615

CAGE analysis