Hb_180980_010

Information

Type -
Description -
Location Contig180980: 2-913
Sequence    

Annotation

kegg
ID mdm:103455177
description probable LRR receptor-like serine/threonine-protein kinase At3g47570
nr
ID XP_008392990.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A072TTD4
description LRR receptor-like kinase family protein OS=Medicago truncatula GN=MTR_8g068540 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17482: 265-726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180980_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
2 Hb_133492_010 0.0533463536 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_029791_010 0.0745546225 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
4 Hb_000197_260 0.086149254 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
5 Hb_000599_160 0.088943318 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
6 Hb_000317_170 0.0906502692 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
7 Hb_000137_050 0.0938782687 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000864_050 0.094650512 - - zinc finger protein, putative [Ricinus communis]
9 Hb_152914_010 0.0955597098 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
10 Hb_004625_020 0.0966820071 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
11 Hb_007579_030 0.0994294648 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_002186_110 0.0997911925 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
13 Hb_007545_220 0.1011148986 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
14 Hb_000000_260 0.1011211452 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
15 Hb_005183_070 0.1012570147 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
16 Hb_011381_050 0.1016188095 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
17 Hb_004450_090 0.1017902243 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
18 Hb_001680_050 0.1026723872 - - -
19 Hb_000856_030 0.1030460652 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000368_040 0.1073363038 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_180980_010 Hb_180980_010 Hb_133492_010 Hb_133492_010 Hb_180980_010--Hb_133492_010 Hb_029791_010 Hb_029791_010 Hb_180980_010--Hb_029791_010 Hb_000197_260 Hb_000197_260 Hb_180980_010--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_180980_010--Hb_000599_160 Hb_000317_170 Hb_000317_170 Hb_180980_010--Hb_000317_170 Hb_000137_050 Hb_000137_050 Hb_180980_010--Hb_000137_050 Hb_000864_050 Hb_000864_050 Hb_133492_010--Hb_000864_050 Hb_004625_020 Hb_004625_020 Hb_133492_010--Hb_004625_020 Hb_002171_050 Hb_002171_050 Hb_133492_010--Hb_002171_050 Hb_004917_020 Hb_004917_020 Hb_133492_010--Hb_004917_020 Hb_133492_010--Hb_029791_010 Hb_000000_260 Hb_000000_260 Hb_029791_010--Hb_000000_260 Hb_029791_010--Hb_000317_170 Hb_001936_120 Hb_001936_120 Hb_029791_010--Hb_001936_120 Hb_029791_010--Hb_000599_160 Hb_005183_070 Hb_005183_070 Hb_000197_260--Hb_005183_070 Hb_152914_010 Hb_152914_010 Hb_000197_260--Hb_152914_010 Hb_029665_010 Hb_029665_010 Hb_000197_260--Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_000197_260--Hb_001680_050 Hb_002186_110 Hb_002186_110 Hb_000197_260--Hb_002186_110 Hb_007579_030 Hb_007579_030 Hb_000197_260--Hb_007579_030 Hb_000599_160--Hb_000317_170 Hb_000307_060 Hb_000307_060 Hb_000599_160--Hb_000307_060 Hb_000599_160--Hb_000864_050 Hb_007545_220 Hb_007545_220 Hb_000599_160--Hb_007545_220 Hb_000317_170--Hb_000000_260 Hb_000317_170--Hb_001680_050 Hb_000856_030 Hb_000856_030 Hb_000317_170--Hb_000856_030 Hb_000317_170--Hb_000307_060 Hb_000137_050--Hb_152914_010 Hb_000137_050--Hb_000856_030 Hb_000137_050--Hb_000197_260 Hb_000137_050--Hb_004917_020 Hb_000137_050--Hb_000317_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.11633 0.539686 5.1896 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.198469 1.81839

CAGE analysis