Hb_000856_030

Information

Type -
Description -
Location Contig856: 23423-24997
Sequence    

Annotation

kegg
ID rcu:RCOM_1513130
description ATP binding protein, putative
nr
ID XP_002511494.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID B9R919
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1513130 PE=3 SV=1
Gene Ontology
ID GO:0005524
description probable mitochondrial chaperone bcs1-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60564: 23414-24436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_030 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000368_040 0.064364666 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000317_170 0.0664401203 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_001680_050 0.0779092373 - - -
5 Hb_000137_050 0.0830178475 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007579_030 0.1014668373 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_000197_260 0.102155377 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
8 Hb_000928_200 0.1028929259 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
9 Hb_180980_010 0.1030460652 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
10 Hb_000000_260 0.1052396494 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
11 Hb_005183_070 0.1056603905 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
12 Hb_000009_250 0.1060329553 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_152914_010 0.1080344384 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
14 Hb_029665_010 0.110936689 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_004917_020 0.1121430635 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
16 Hb_029791_010 0.1135752318 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
17 Hb_002171_050 0.1149453639 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
18 Hb_001279_400 0.1162795873 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
19 Hb_011224_150 0.118567941 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
20 Hb_133492_010 0.1196241007 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000856_030 Hb_000856_030 Hb_000368_040 Hb_000368_040 Hb_000856_030--Hb_000368_040 Hb_000317_170 Hb_000317_170 Hb_000856_030--Hb_000317_170 Hb_001680_050 Hb_001680_050 Hb_000856_030--Hb_001680_050 Hb_000137_050 Hb_000137_050 Hb_000856_030--Hb_000137_050 Hb_007579_030 Hb_007579_030 Hb_000856_030--Hb_007579_030 Hb_000197_260 Hb_000197_260 Hb_000856_030--Hb_000197_260 Hb_000368_040--Hb_001680_050 Hb_005183_070 Hb_005183_070 Hb_000368_040--Hb_005183_070 Hb_000009_250 Hb_000009_250 Hb_000368_040--Hb_000009_250 Hb_029665_010 Hb_029665_010 Hb_000368_040--Hb_029665_010 Hb_000368_040--Hb_000317_170 Hb_000000_260 Hb_000000_260 Hb_000317_170--Hb_000000_260 Hb_000317_170--Hb_001680_050 Hb_000307_060 Hb_000307_060 Hb_000317_170--Hb_000307_060 Hb_029791_010 Hb_029791_010 Hb_000317_170--Hb_029791_010 Hb_000599_160 Hb_000599_160 Hb_000317_170--Hb_000599_160 Hb_001680_050--Hb_007579_030 Hb_001680_050--Hb_029665_010 Hb_001680_050--Hb_000197_260 Hb_152914_010 Hb_152914_010 Hb_000137_050--Hb_152914_010 Hb_000137_050--Hb_000197_260 Hb_004917_020 Hb_004917_020 Hb_000137_050--Hb_004917_020 Hb_180980_010 Hb_180980_010 Hb_000137_050--Hb_180980_010 Hb_000137_050--Hb_000317_170 Hb_001401_120 Hb_001401_120 Hb_007579_030--Hb_001401_120 Hb_007579_030--Hb_029665_010 Hb_001366_300 Hb_001366_300 Hb_007579_030--Hb_001366_300 Hb_029238_040 Hb_029238_040 Hb_007579_030--Hb_029238_040 Hb_007579_030--Hb_000197_260 Hb_000197_260--Hb_005183_070 Hb_000197_260--Hb_152914_010 Hb_000197_260--Hb_029665_010 Hb_002186_110 Hb_002186_110 Hb_000197_260--Hb_002186_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0613132 2.79016 0.914314 11.5971 0.0364321 0.108389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0295292 0.023232 0.0437276 0.481899 5.40559

CAGE analysis