Hb_029665_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig29665: 21787-23278
Sequence    

Annotation

kegg
ID rcu:RCOM_1313880
description NAC domain-containing protein, putative
nr
ID XP_002518924.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q84WP6
description NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2
trembl
ID B9RYV5
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_1313880 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 43-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029665_010 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_001680_050 0.068768923 - - -
3 Hb_000197_260 0.0747949202 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
4 Hb_007579_030 0.0773991488 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_000368_040 0.0884029025 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_005183_070 0.0975813299 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
7 Hb_001401_120 0.0980054416 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
8 Hb_148262_010 0.1028408084 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009117_020 0.1049595438 - - RALF-LIKE 32 family protein [Populus trichocarpa]
10 Hb_000953_110 0.1095251682 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
11 Hb_000856_030 0.110936689 - - ATP binding protein, putative [Ricinus communis]
12 Hb_007545_220 0.1116295968 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
13 Hb_000317_170 0.1129932542 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
14 Hb_005614_020 0.1145394074 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
15 Hb_152914_010 0.1181223183 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
16 Hb_011381_050 0.121018494 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
17 Hb_000012_380 0.121033131 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
18 Hb_026124_020 0.1215397418 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
19 Hb_029238_040 0.1223692033 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
20 Hb_000853_140 0.1240452611 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]

Gene co-expression network

sample Hb_029665_010 Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_029665_010--Hb_001680_050 Hb_000197_260 Hb_000197_260 Hb_029665_010--Hb_000197_260 Hb_007579_030 Hb_007579_030 Hb_029665_010--Hb_007579_030 Hb_000368_040 Hb_000368_040 Hb_029665_010--Hb_000368_040 Hb_005183_070 Hb_005183_070 Hb_029665_010--Hb_005183_070 Hb_001401_120 Hb_001401_120 Hb_029665_010--Hb_001401_120 Hb_001680_050--Hb_007579_030 Hb_000317_170 Hb_000317_170 Hb_001680_050--Hb_000317_170 Hb_001680_050--Hb_000368_040 Hb_001680_050--Hb_000197_260 Hb_000856_030 Hb_000856_030 Hb_001680_050--Hb_000856_030 Hb_000197_260--Hb_005183_070 Hb_152914_010 Hb_152914_010 Hb_000197_260--Hb_152914_010 Hb_002186_110 Hb_002186_110 Hb_000197_260--Hb_002186_110 Hb_000197_260--Hb_007579_030 Hb_007579_030--Hb_001401_120 Hb_001366_300 Hb_001366_300 Hb_007579_030--Hb_001366_300 Hb_029238_040 Hb_029238_040 Hb_007579_030--Hb_029238_040 Hb_000368_040--Hb_000856_030 Hb_000368_040--Hb_005183_070 Hb_000009_250 Hb_000009_250 Hb_000368_040--Hb_000009_250 Hb_000368_040--Hb_000317_170 Hb_005588_050 Hb_005588_050 Hb_005183_070--Hb_005588_050 Hb_005183_070--Hb_000317_170 Hb_005183_070--Hb_001680_050 Hb_148262_010 Hb_148262_010 Hb_001401_120--Hb_148262_010 Hb_009117_020 Hb_009117_020 Hb_001401_120--Hb_009117_020 Hb_026124_020 Hb_026124_020 Hb_001401_120--Hb_026124_020 Hb_001401_120--Hb_029238_040 Hb_001401_120--Hb_001366_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0661596 2.00576 0.605846 10.1178 0.0663169 0.0513246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0237646 4.13082

CAGE analysis