Hb_000368_040

Information

Type -
Description -
Location Contig368: 29553-32729
Sequence    

Annotation

kegg
ID rcu:RCOM_1595930
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002510452.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID F4HQX1
description Jacalin-related lectin 3 OS=Arabidopsis thaliana GN=JAL3 PE=2 SV=1
trembl
ID B9R809
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1595930 PE=4 SV=1
Gene Ontology
ID GO:0030246
description mannose-binding lectin superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37810: 29608-32059
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000368_040 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000856_030 0.064364666 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001680_050 0.0692543218 - - -
4 Hb_005183_070 0.0848041362 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
5 Hb_000009_250 0.0876904818 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_029665_010 0.0884029025 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_000317_170 0.0888951938 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
8 Hb_007579_030 0.0933375382 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_002171_050 0.0937925177 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
10 Hb_000197_260 0.0971589925 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
11 Hb_180980_010 0.1073363038 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
12 Hb_001709_080 0.1084681505 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_000137_050 0.1110744736 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004625_020 0.1118867547 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
15 Hb_005614_020 0.1139386448 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
16 Hb_000599_160 0.1156614168 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
17 Hb_000245_110 0.1157111028 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
18 Hb_000012_380 0.1173855709 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
19 Hb_133492_010 0.1189237052 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_001279_400 0.1197614256 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]

Gene co-expression network

sample Hb_000368_040 Hb_000368_040 Hb_000856_030 Hb_000856_030 Hb_000368_040--Hb_000856_030 Hb_001680_050 Hb_001680_050 Hb_000368_040--Hb_001680_050 Hb_005183_070 Hb_005183_070 Hb_000368_040--Hb_005183_070 Hb_000009_250 Hb_000009_250 Hb_000368_040--Hb_000009_250 Hb_029665_010 Hb_029665_010 Hb_000368_040--Hb_029665_010 Hb_000317_170 Hb_000317_170 Hb_000368_040--Hb_000317_170 Hb_000856_030--Hb_000317_170 Hb_000856_030--Hb_001680_050 Hb_000137_050 Hb_000137_050 Hb_000856_030--Hb_000137_050 Hb_007579_030 Hb_007579_030 Hb_000856_030--Hb_007579_030 Hb_000197_260 Hb_000197_260 Hb_000856_030--Hb_000197_260 Hb_001680_050--Hb_007579_030 Hb_001680_050--Hb_000317_170 Hb_001680_050--Hb_029665_010 Hb_001680_050--Hb_000197_260 Hb_005183_070--Hb_000197_260 Hb_005588_050 Hb_005588_050 Hb_005183_070--Hb_005588_050 Hb_005183_070--Hb_029665_010 Hb_005183_070--Hb_000317_170 Hb_005183_070--Hb_001680_050 Hb_001976_100 Hb_001976_100 Hb_000009_250--Hb_001976_100 Hb_001709_080 Hb_001709_080 Hb_000009_250--Hb_001709_080 Hb_002171_050 Hb_002171_050 Hb_000009_250--Hb_002171_050 Hb_000080_100 Hb_000080_100 Hb_000009_250--Hb_000080_100 Hb_002835_070 Hb_002835_070 Hb_000009_250--Hb_002835_070 Hb_029665_010--Hb_000197_260 Hb_029665_010--Hb_007579_030 Hb_001401_120 Hb_001401_120 Hb_029665_010--Hb_001401_120 Hb_000000_260 Hb_000000_260 Hb_000317_170--Hb_000000_260 Hb_000307_060 Hb_000307_060 Hb_000317_170--Hb_000307_060 Hb_029791_010 Hb_029791_010 Hb_000317_170--Hb_029791_010 Hb_000599_160 Hb_000599_160 Hb_000317_170--Hb_000599_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.020593 3.29135 0.901367 17.8973 0.0730585 0.0950669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0417768 0 0.0312244 0.47704 7.93533

CAGE analysis