Hb_000080_100

Information

Type transcription factor
Description TF Family: MYB
Location Contig80: 64609-66262
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03650g
description POPTRDRAFT_569401; MYB transcription factor R2R3 type family protein
nr
ID XP_012065267.1
description PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A097HUI3
description MYB family protein OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcriptional activator myb-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_100 0.0 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
2 Hb_000009_250 0.0981137713 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_011224_150 0.1008714551 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
4 Hb_001976_100 0.1112211135 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
5 Hb_002171_050 0.1158210021 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
6 Hb_004930_020 0.1190439587 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
7 Hb_001019_030 0.1233662631 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
8 Hb_004625_020 0.1263183544 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
9 Hb_000368_040 0.1275171687 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000046_390 0.1315307623 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
11 Hb_000856_030 0.1329425403 - - ATP binding protein, putative [Ricinus communis]
12 Hb_005391_050 0.1332065257 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
13 Hb_000334_030 0.1347572139 - - conserved hypothetical protein [Ricinus communis]
14 Hb_142056_010 0.1363775737 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
15 Hb_001268_290 0.136735213 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
16 Hb_001131_050 0.1372800367 - - hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
17 Hb_000137_050 0.1466907785 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000392_540 0.1481473071 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
19 Hb_005183_130 0.1488078874 - - glycogenin, putative [Ricinus communis]
20 Hb_004917_020 0.1502751453 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000080_100 Hb_000080_100 Hb_000009_250 Hb_000009_250 Hb_000080_100--Hb_000009_250 Hb_011224_150 Hb_011224_150 Hb_000080_100--Hb_011224_150 Hb_001976_100 Hb_001976_100 Hb_000080_100--Hb_001976_100 Hb_002171_050 Hb_002171_050 Hb_000080_100--Hb_002171_050 Hb_004930_020 Hb_004930_020 Hb_000080_100--Hb_004930_020 Hb_001019_030 Hb_001019_030 Hb_000080_100--Hb_001019_030 Hb_000009_250--Hb_001976_100 Hb_001709_080 Hb_001709_080 Hb_000009_250--Hb_001709_080 Hb_000368_040 Hb_000368_040 Hb_000009_250--Hb_000368_040 Hb_000009_250--Hb_002171_050 Hb_002835_070 Hb_002835_070 Hb_000009_250--Hb_002835_070 Hb_000392_540 Hb_000392_540 Hb_011224_150--Hb_000392_540 Hb_002890_110 Hb_002890_110 Hb_011224_150--Hb_002890_110 Hb_000856_030 Hb_000856_030 Hb_011224_150--Hb_000856_030 Hb_000367_080 Hb_000367_080 Hb_011224_150--Hb_000367_080 Hb_011224_150--Hb_000009_250 Hb_001976_100--Hb_004930_020 Hb_000023_180 Hb_000023_180 Hb_001976_100--Hb_000023_180 Hb_001976_100--Hb_002835_070 Hb_001396_130 Hb_001396_130 Hb_001976_100--Hb_001396_130 Hb_000334_030 Hb_000334_030 Hb_001976_100--Hb_000334_030 Hb_000449_070 Hb_000449_070 Hb_002171_050--Hb_000449_070 Hb_004625_020 Hb_004625_020 Hb_002171_050--Hb_004625_020 Hb_004917_020 Hb_004917_020 Hb_002171_050--Hb_004917_020 Hb_005614_020 Hb_005614_020 Hb_002171_050--Hb_005614_020 Hb_133492_010 Hb_133492_010 Hb_002171_050--Hb_133492_010 Hb_002499_030 Hb_002499_030 Hb_002171_050--Hb_002499_030 Hb_004930_020--Hb_000334_030 Hb_000959_110 Hb_000959_110 Hb_004930_020--Hb_000959_110 Hb_184074_010 Hb_184074_010 Hb_004930_020--Hb_184074_010 Hb_004930_020--Hb_000009_250 Hb_004930_020--Hb_001019_030 Hb_006386_010 Hb_006386_010 Hb_001019_030--Hb_006386_010 Hb_001268_290 Hb_001268_290 Hb_001019_030--Hb_001268_290 Hb_001019_030--Hb_184074_010 Hb_001019_030--Hb_000334_030 Hb_005116_040 Hb_005116_040 Hb_001019_030--Hb_005116_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.297499 1.99616 0.521748 14.6788 0.0253206 0.071539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.39891 6.89644

CAGE analysis