Hb_011224_150

Information

Type -
Description -
Location Contig11224: 87140-90189
Sequence    

Annotation

kegg
ID vvi:100260079
description E3 ubiquitin-protein ligase At4g11680
nr
ID XP_012071078.1
description PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID A0A067KT66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01079 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase at4g11680

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03697: 87584-90126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011224_150 0.0 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
2 Hb_000392_540 0.0990844509 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
3 Hb_000080_100 0.1008714551 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
4 Hb_002890_110 0.1149262321 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
5 Hb_000856_030 0.118567941 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000367_080 0.1196423531 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
7 Hb_000009_250 0.1226461825 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_001976_100 0.1228577257 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
9 Hb_000368_040 0.1257679512 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000152_520 0.1267490353 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
11 Hb_004625_020 0.1303190448 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
12 Hb_001360_020 0.1328467772 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
13 Hb_174541_030 0.1346329752 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
14 Hb_142056_010 0.1350142795 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
15 Hb_005391_050 0.1360492931 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
16 Hb_010968_030 0.1371360044 - - PREDICTED: uncharacterized protein LOC105643149 [Jatropha curcas]
17 Hb_002171_050 0.1389534014 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
18 Hb_001131_050 0.1400126476 - - hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
19 Hb_000046_390 0.1407847301 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
20 Hb_001019_030 0.1418745252 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_011224_150 Hb_011224_150 Hb_000392_540 Hb_000392_540 Hb_011224_150--Hb_000392_540 Hb_000080_100 Hb_000080_100 Hb_011224_150--Hb_000080_100 Hb_002890_110 Hb_002890_110 Hb_011224_150--Hb_002890_110 Hb_000856_030 Hb_000856_030 Hb_011224_150--Hb_000856_030 Hb_000367_080 Hb_000367_080 Hb_011224_150--Hb_000367_080 Hb_000009_250 Hb_000009_250 Hb_011224_150--Hb_000009_250 Hb_010968_030 Hb_010968_030 Hb_000392_540--Hb_010968_030 Hb_000251_120 Hb_000251_120 Hb_000392_540--Hb_000251_120 Hb_000392_540--Hb_000367_080 Hb_004957_050 Hb_004957_050 Hb_000392_540--Hb_004957_050 Hb_000392_540--Hb_002890_110 Hb_000080_100--Hb_000009_250 Hb_001976_100 Hb_001976_100 Hb_000080_100--Hb_001976_100 Hb_002171_050 Hb_002171_050 Hb_000080_100--Hb_002171_050 Hb_004930_020 Hb_004930_020 Hb_000080_100--Hb_004930_020 Hb_001019_030 Hb_001019_030 Hb_000080_100--Hb_001019_030 Hb_001269_580 Hb_001269_580 Hb_002890_110--Hb_001269_580 Hb_009122_010 Hb_009122_010 Hb_002890_110--Hb_009122_010 Hb_142056_010 Hb_142056_010 Hb_002890_110--Hb_142056_010 Hb_002750_040 Hb_002750_040 Hb_002890_110--Hb_002750_040 Hb_000368_040 Hb_000368_040 Hb_000856_030--Hb_000368_040 Hb_000317_170 Hb_000317_170 Hb_000856_030--Hb_000317_170 Hb_001680_050 Hb_001680_050 Hb_000856_030--Hb_001680_050 Hb_000137_050 Hb_000137_050 Hb_000856_030--Hb_000137_050 Hb_007579_030 Hb_007579_030 Hb_000856_030--Hb_007579_030 Hb_000197_260 Hb_000197_260 Hb_000856_030--Hb_000197_260 Hb_000928_200 Hb_000928_200 Hb_000367_080--Hb_000928_200 Hb_000367_080--Hb_010968_030 Hb_000367_080--Hb_000856_030 Hb_000367_080--Hb_000251_120 Hb_000009_250--Hb_001976_100 Hb_001709_080 Hb_001709_080 Hb_000009_250--Hb_001709_080 Hb_000009_250--Hb_000368_040 Hb_000009_250--Hb_002171_050 Hb_002835_070 Hb_002835_070 Hb_000009_250--Hb_002835_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.384636 14.1527 3.3297 89.664 0.335075 0.590302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.480014 0.711842 1.02382 9.53306 39.2421

CAGE analysis