Hb_000392_540

Information

Type -
Description -
Location Contig392: 399591-403016
Sequence    

Annotation

kegg
ID tcc:TCM_013826
description SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 1
nr
ID XP_011071605.1
description PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
swissprot
ID Q9FM19
description Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1
trembl
ID A6YGE4
description Hypersensitive-induced response protein OS=Carica papaya PE=2 SV=1
Gene Ontology
ID GO:0016020
description hypersensitive-induced response protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_540 0.0 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
2 Hb_010968_030 0.0953961277 - - PREDICTED: uncharacterized protein LOC105643149 [Jatropha curcas]
3 Hb_011224_150 0.0990844509 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
4 Hb_000251_120 0.1090927293 - - O-acetyltransferase, putative [Ricinus communis]
5 Hb_000367_080 0.1101460466 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
6 Hb_004957_050 0.1211056721 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
7 Hb_002890_110 0.121852802 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
8 Hb_001976_100 0.1226630641 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
9 Hb_174541_030 0.132550059 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
10 Hb_006916_140 0.1334387446 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
11 Hb_001001_070 0.1360657853 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
12 Hb_113766_010 0.1416840905 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
13 Hb_001195_380 0.1417820472 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
14 Hb_001269_580 0.1438674972 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
15 Hb_001008_080 0.1471510886 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
16 Hb_000080_100 0.1481473071 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
17 Hb_000963_120 0.1494980474 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
18 Hb_002495_030 0.1518699724 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
19 Hb_000023_180 0.1529678462 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
20 Hb_001235_120 0.1533922907 - - hypothetical protein JCGZ_03395 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_540 Hb_000392_540 Hb_010968_030 Hb_010968_030 Hb_000392_540--Hb_010968_030 Hb_011224_150 Hb_011224_150 Hb_000392_540--Hb_011224_150 Hb_000251_120 Hb_000251_120 Hb_000392_540--Hb_000251_120 Hb_000367_080 Hb_000367_080 Hb_000392_540--Hb_000367_080 Hb_004957_050 Hb_004957_050 Hb_000392_540--Hb_004957_050 Hb_002890_110 Hb_002890_110 Hb_000392_540--Hb_002890_110 Hb_010968_030--Hb_000367_080 Hb_009222_080 Hb_009222_080 Hb_010968_030--Hb_009222_080 Hb_001008_080 Hb_001008_080 Hb_010968_030--Hb_001008_080 Hb_010968_030--Hb_011224_150 Hb_001195_380 Hb_001195_380 Hb_010968_030--Hb_001195_380 Hb_000080_100 Hb_000080_100 Hb_011224_150--Hb_000080_100 Hb_011224_150--Hb_002890_110 Hb_000856_030 Hb_000856_030 Hb_011224_150--Hb_000856_030 Hb_011224_150--Hb_000367_080 Hb_000009_250 Hb_000009_250 Hb_011224_150--Hb_000009_250 Hb_001001_070 Hb_001001_070 Hb_000251_120--Hb_001001_070 Hb_000108_180 Hb_000108_180 Hb_000251_120--Hb_000108_180 Hb_003177_040 Hb_003177_040 Hb_000251_120--Hb_003177_040 Hb_008461_060 Hb_008461_060 Hb_000251_120--Hb_008461_060 Hb_000251_120--Hb_001195_380 Hb_000928_200 Hb_000928_200 Hb_000367_080--Hb_000928_200 Hb_000367_080--Hb_000856_030 Hb_000367_080--Hb_000251_120 Hb_003052_080 Hb_003052_080 Hb_004957_050--Hb_003052_080 Hb_002374_510 Hb_002374_510 Hb_004957_050--Hb_002374_510 Hb_113766_010 Hb_113766_010 Hb_004957_050--Hb_113766_010 Hb_014361_010 Hb_014361_010 Hb_004957_050--Hb_014361_010 Hb_004957_050--Hb_001008_080 Hb_001269_580 Hb_001269_580 Hb_002890_110--Hb_001269_580 Hb_009122_010 Hb_009122_010 Hb_002890_110--Hb_009122_010 Hb_142056_010 Hb_142056_010 Hb_002890_110--Hb_142056_010 Hb_002750_040 Hb_002750_040 Hb_002890_110--Hb_002750_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0719347 1.36722 0.631343 8.67634 0.0404237 0.117392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.163947 0.180569 0.145153 1.29814 5.71001

CAGE analysis