Hb_000108_180

Information

Type -
Description -
Location Contig108: 153575-155846
Sequence    

Annotation

kegg
ID rcu:RCOM_0879260
description hypothetical protein
nr
ID XP_012067089.1
description PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01886 PE=4 SV=1
Gene Ontology
ID GO:0005794
description calcium ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02398: 156799-164353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_180 0.0 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
2 Hb_003177_040 0.0766245568 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_000251_120 0.0809705598 - - O-acetyltransferase, putative [Ricinus communis]
4 Hb_001001_070 0.0979171061 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
5 Hb_001541_060 0.1090463477 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000176_080 0.1214384515 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
7 Hb_005183_130 0.1265271703 - - glycogenin, putative [Ricinus communis]
8 Hb_000236_290 0.1272434222 - - organic anion transporter, putative [Ricinus communis]
9 Hb_150486_010 0.1273171485 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
10 Hb_003086_030 0.1298268667 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
11 Hb_000820_110 0.1301841589 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
12 Hb_025645_020 0.1315745517 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_008461_060 0.1322903147 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
14 Hb_019516_060 0.1377915399 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
15 Hb_001366_110 0.1383809308 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000193_210 0.1395517197 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
17 Hb_000030_130 0.1410683336 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_006750_010 0.1434401039 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
19 Hb_158092_050 0.1435856441 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
20 Hb_019516_070 0.1440553033 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]

Gene co-expression network

sample Hb_000108_180 Hb_000108_180 Hb_003177_040 Hb_003177_040 Hb_000108_180--Hb_003177_040 Hb_000251_120 Hb_000251_120 Hb_000108_180--Hb_000251_120 Hb_001001_070 Hb_001001_070 Hb_000108_180--Hb_001001_070 Hb_001541_060 Hb_001541_060 Hb_000108_180--Hb_001541_060 Hb_000176_080 Hb_000176_080 Hb_000108_180--Hb_000176_080 Hb_005183_130 Hb_005183_130 Hb_000108_180--Hb_005183_130 Hb_003177_040--Hb_001001_070 Hb_000236_290 Hb_000236_290 Hb_003177_040--Hb_000236_290 Hb_008461_060 Hb_008461_060 Hb_003177_040--Hb_008461_060 Hb_001699_080 Hb_001699_080 Hb_003177_040--Hb_001699_080 Hb_003177_040--Hb_000251_120 Hb_000251_120--Hb_001001_070 Hb_000392_540 Hb_000392_540 Hb_000251_120--Hb_000392_540 Hb_000251_120--Hb_008461_060 Hb_001195_380 Hb_001195_380 Hb_000251_120--Hb_001195_380 Hb_001001_070--Hb_008461_060 Hb_002081_020 Hb_002081_020 Hb_001001_070--Hb_002081_020 Hb_002759_030 Hb_002759_030 Hb_001001_070--Hb_002759_030 Hb_150486_010 Hb_150486_010 Hb_001541_060--Hb_150486_010 Hb_001541_060--Hb_000251_120 Hb_001366_110 Hb_001366_110 Hb_001541_060--Hb_001366_110 Hb_001541_060--Hb_003177_040 Hb_000236_230 Hb_000236_230 Hb_001541_060--Hb_000236_230 Hb_003623_040 Hb_003623_040 Hb_000176_080--Hb_003623_040 Hb_000176_080--Hb_005183_130 Hb_025645_020 Hb_025645_020 Hb_000176_080--Hb_025645_020 Hb_000030_130 Hb_000030_130 Hb_000176_080--Hb_000030_130 Hb_000176_080--Hb_000251_120 Hb_004586_440 Hb_004586_440 Hb_005183_130--Hb_004586_440 Hb_000482_080 Hb_000482_080 Hb_005183_130--Hb_000482_080 Hb_000020_140 Hb_000020_140 Hb_005183_130--Hb_000020_140 Hb_005183_130--Hb_001001_070 Hb_000449_070 Hb_000449_070 Hb_005183_130--Hb_000449_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25131 8.54246 16.7811 112.61 3.90144 2.53858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2948 0.668069 3.45722 6.0635 66.1448

CAGE analysis