Hb_001541_060

Information

Type -
Description -
Location Contig1541: 58446-59633
Sequence    

Annotation

kegg
ID rcu:RCOM_0794260
description hypothetical protein
nr
ID XP_002530053.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVN4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0794260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13269: 59038-59159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000108_180 0.1090463477 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
3 Hb_150486_010 0.1198330844 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
4 Hb_000251_120 0.1242254432 - - O-acetyltransferase, putative [Ricinus communis]
5 Hb_001366_110 0.1410640978 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003177_040 0.1438410858 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
7 Hb_000236_230 0.1443378328 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
8 Hb_000236_290 0.1586824369 - - organic anion transporter, putative [Ricinus communis]
9 Hb_001001_070 0.1603242579 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
10 Hb_019516_060 0.1608543797 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
11 Hb_000176_080 0.1647505844 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
12 Hb_025645_020 0.1691887296 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_006750_010 0.1694133637 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
14 Hb_000193_210 0.1707580304 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
15 Hb_000820_110 0.1709706481 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
16 Hb_158092_050 0.1723083659 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
17 Hb_000077_100 0.1750943529 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
18 Hb_000236_180 0.1759265802 - - serine hydroxymethyltransferase, putative [Ricinus communis]
19 Hb_000030_130 0.1772743411 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
20 Hb_000246_130 0.1778367561 - - tubulin alpha chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_001541_060 Hb_001541_060 Hb_000108_180 Hb_000108_180 Hb_001541_060--Hb_000108_180 Hb_150486_010 Hb_150486_010 Hb_001541_060--Hb_150486_010 Hb_000251_120 Hb_000251_120 Hb_001541_060--Hb_000251_120 Hb_001366_110 Hb_001366_110 Hb_001541_060--Hb_001366_110 Hb_003177_040 Hb_003177_040 Hb_001541_060--Hb_003177_040 Hb_000236_230 Hb_000236_230 Hb_001541_060--Hb_000236_230 Hb_000108_180--Hb_003177_040 Hb_000108_180--Hb_000251_120 Hb_001001_070 Hb_001001_070 Hb_000108_180--Hb_001001_070 Hb_000176_080 Hb_000176_080 Hb_000108_180--Hb_000176_080 Hb_005183_130 Hb_005183_130 Hb_000108_180--Hb_005183_130 Hb_000165_020 Hb_000165_020 Hb_150486_010--Hb_000165_020 Hb_150486_010--Hb_000108_180 Hb_025645_020 Hb_025645_020 Hb_150486_010--Hb_025645_020 Hb_150486_010--Hb_000236_230 Hb_150486_010--Hb_001366_110 Hb_000251_120--Hb_001001_070 Hb_000392_540 Hb_000392_540 Hb_000251_120--Hb_000392_540 Hb_000251_120--Hb_003177_040 Hb_008461_060 Hb_008461_060 Hb_000251_120--Hb_008461_060 Hb_001195_380 Hb_001195_380 Hb_000251_120--Hb_001195_380 Hb_158092_050 Hb_158092_050 Hb_001366_110--Hb_158092_050 Hb_001366_110--Hb_000236_230 Hb_116701_010 Hb_116701_010 Hb_001366_110--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_001366_110--Hb_000130_350 Hb_001366_110--Hb_000108_180 Hb_003177_040--Hb_001001_070 Hb_000236_290 Hb_000236_290 Hb_003177_040--Hb_000236_290 Hb_003177_040--Hb_008461_060 Hb_001699_080 Hb_001699_080 Hb_003177_040--Hb_001699_080 Hb_000428_040 Hb_000428_040 Hb_000236_230--Hb_000428_040 Hb_000236_230--Hb_000251_120 Hb_000236_230--Hb_116701_010 Hb_000236_230--Hb_000130_350 Hb_000236_230--Hb_005183_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0763404 0.128551 0.208094 1.60795 0.0685475 0.0567095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0645992 0.12011 0.0776478 1.00212

CAGE analysis