Hb_001195_380

Information

Type -
Description -
Location Contig1195: 223836-228478
Sequence    

Annotation

kegg
ID rcu:RCOM_1594150
description hypothetical protein
nr
ID XP_012071832.1
description PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04421 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05825: 225595-225996 , PASA_asmbl_05827: 227255-228162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_380 0.0 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
2 Hb_000580_110 0.1156179158 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
3 Hb_006750_010 0.1178742383 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
4 Hb_000251_120 0.1230106988 - - O-acetyltransferase, putative [Ricinus communis]
5 Hb_001008_080 0.1282457145 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
6 Hb_002495_030 0.1327368857 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
7 Hb_002596_080 0.133526949 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
8 Hb_010968_030 0.1376234145 - - PREDICTED: uncharacterized protein LOC105643149 [Jatropha curcas]
9 Hb_000236_180 0.1404413366 - - serine hydroxymethyltransferase, putative [Ricinus communis]
10 Hb_000392_540 0.1417820472 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
11 Hb_003006_090 0.1474753208 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
12 Hb_001916_150 0.1487128739 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
13 Hb_001493_060 0.1497047908 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
14 Hb_001195_090 0.1505182454 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
15 Hb_003462_040 0.1523087643 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_003226_250 0.15324143 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
17 Hb_020378_020 0.1533394984 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_098795_030 0.1555736176 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
19 Hb_001001_070 0.1565774003 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
20 Hb_000417_380 0.159061418 - - SecY protein transport family protein [Theobroma cacao]

Gene co-expression network

sample Hb_001195_380 Hb_001195_380 Hb_000580_110 Hb_000580_110 Hb_001195_380--Hb_000580_110 Hb_006750_010 Hb_006750_010 Hb_001195_380--Hb_006750_010 Hb_000251_120 Hb_000251_120 Hb_001195_380--Hb_000251_120 Hb_001008_080 Hb_001008_080 Hb_001195_380--Hb_001008_080 Hb_002495_030 Hb_002495_030 Hb_001195_380--Hb_002495_030 Hb_002596_080 Hb_002596_080 Hb_001195_380--Hb_002596_080 Hb_000236_180 Hb_000236_180 Hb_000580_110--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000580_110--Hb_000417_380 Hb_000580_110--Hb_002495_030 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060 Hb_003462_040 Hb_003462_040 Hb_006750_010--Hb_003462_040 Hb_028396_020 Hb_028396_020 Hb_006750_010--Hb_028396_020 Hb_001369_010 Hb_001369_010 Hb_006750_010--Hb_001369_010 Hb_000820_110 Hb_000820_110 Hb_006750_010--Hb_000820_110 Hb_019516_060 Hb_019516_060 Hb_006750_010--Hb_019516_060 Hb_001001_070 Hb_001001_070 Hb_000251_120--Hb_001001_070 Hb_000108_180 Hb_000108_180 Hb_000251_120--Hb_000108_180 Hb_000392_540 Hb_000392_540 Hb_000251_120--Hb_000392_540 Hb_003177_040 Hb_003177_040 Hb_000251_120--Hb_003177_040 Hb_008461_060 Hb_008461_060 Hb_000251_120--Hb_008461_060 Hb_001008_080--Hb_002495_030 Hb_000003_580 Hb_000003_580 Hb_001008_080--Hb_000003_580 Hb_001008_080--Hb_006750_010 Hb_020378_020 Hb_020378_020 Hb_001008_080--Hb_020378_020 Hb_003086_030 Hb_003086_030 Hb_001008_080--Hb_003086_030 Hb_098795_030 Hb_098795_030 Hb_002495_030--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_002495_030--Hb_006615_230 Hb_003052_080 Hb_003052_080 Hb_002495_030--Hb_003052_080 Hb_007590_100 Hb_007590_100 Hb_002495_030--Hb_007590_100 Hb_011310_040 Hb_011310_040 Hb_002596_080--Hb_011310_040 Hb_002596_080--Hb_001493_060 Hb_002157_270 Hb_002157_270 Hb_002596_080--Hb_002157_270 Hb_003226_250 Hb_003226_250 Hb_002596_080--Hb_003226_250 Hb_001195_090 Hb_001195_090 Hb_002596_080--Hb_001195_090 Hb_000445_150 Hb_000445_150 Hb_002596_080--Hb_000445_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133649 1.1332 0.766935 5.29782 0.307995 0.254915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297996 0.266482 0.24494 0.85792 4.80417

CAGE analysis