Hb_000077_310

Information

Type -
Description -
Location Contig77: 267272-270701
Sequence    

Annotation

kegg
ID rcu:RCOM_1175470
description hypothetical protein
nr
ID XP_012088305.1
description PREDICTED: clathrin light chain 1 [Jatropha curcas]
swissprot
ID Q9SKU1
description Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1
trembl
ID B9RW21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1175470 PE=4 SV=1
Gene Ontology
ID GO:0005886
description clathrin light chain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57611: 267819-270471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_310 0.0 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
2 Hb_000808_150 0.0683263439 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
3 Hb_000417_380 0.1111561179 - - SecY protein transport family protein [Theobroma cacao]
4 Hb_000139_300 0.1114593421 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
5 Hb_000580_110 0.1148721865 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
6 Hb_000107_350 0.1162733448 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
7 Hb_003226_250 0.1164642086 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
8 Hb_000749_020 0.1228510681 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
9 Hb_003783_050 0.1239471981 - - conserved hypothetical protein [Ricinus communis]
10 Hb_036388_010 0.1243857609 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
11 Hb_000649_040 0.1249400529 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
12 Hb_009079_050 0.126043138 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
13 Hb_000236_180 0.1279385096 - - serine hydroxymethyltransferase, putative [Ricinus communis]
14 Hb_161396_010 0.1284078755 - - hypothetical protein F383_26394 [Gossypium arboreum]
15 Hb_000941_120 0.1306344064 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
16 Hb_001369_010 0.1337009417 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
17 Hb_000327_360 0.1354448027 - - unnamed protein product [Coffea canephora]
18 Hb_000768_150 0.1367238739 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
19 Hb_002817_040 0.1369175668 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
20 Hb_000049_160 0.1373835882 - - tyrosine decarboxylase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000077_310 Hb_000077_310 Hb_000808_150 Hb_000808_150 Hb_000077_310--Hb_000808_150 Hb_000417_380 Hb_000417_380 Hb_000077_310--Hb_000417_380 Hb_000139_300 Hb_000139_300 Hb_000077_310--Hb_000139_300 Hb_000580_110 Hb_000580_110 Hb_000077_310--Hb_000580_110 Hb_000107_350 Hb_000107_350 Hb_000077_310--Hb_000107_350 Hb_003226_250 Hb_003226_250 Hb_000077_310--Hb_003226_250 Hb_000808_150--Hb_000139_300 Hb_000749_020 Hb_000749_020 Hb_000808_150--Hb_000749_020 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000327_360 Hb_000327_360 Hb_000808_150--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_000808_150--Hb_161396_010 Hb_000417_380--Hb_000580_110 Hb_000236_180 Hb_000236_180 Hb_000417_380--Hb_000236_180 Hb_036388_010 Hb_036388_010 Hb_000417_380--Hb_036388_010 Hb_189003_070 Hb_189003_070 Hb_000417_380--Hb_189003_070 Hb_003783_050 Hb_003783_050 Hb_000417_380--Hb_003783_050 Hb_000086_210 Hb_000086_210 Hb_000139_300--Hb_000086_210 Hb_026549_070 Hb_026549_070 Hb_000139_300--Hb_026549_070 Hb_005074_040 Hb_005074_040 Hb_000139_300--Hb_005074_040 Hb_004306_110 Hb_004306_110 Hb_000139_300--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_000139_300--Hb_009079_050 Hb_000580_110--Hb_000236_180 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060 Hb_000649_040 Hb_000649_040 Hb_000107_350--Hb_000649_040 Hb_011310_040 Hb_011310_040 Hb_000107_350--Hb_011310_040 Hb_000107_350--Hb_000808_150 Hb_000107_350--Hb_003226_250 Hb_004055_020 Hb_004055_020 Hb_000107_350--Hb_004055_020 Hb_003226_250--Hb_001369_010 Hb_003226_250--Hb_000808_150 Hb_003226_250--Hb_011310_040 Hb_002759_220 Hb_002759_220 Hb_003226_250--Hb_002759_220 Hb_002596_080 Hb_002596_080 Hb_003226_250--Hb_002596_080 Hb_003462_040 Hb_003462_040 Hb_003226_250--Hb_003462_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.844097 1.69304 5.5907 13.7654 0.973799 0.372609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44193 2.08738 1.624 3.71883 11.6617

CAGE analysis