Hb_000649_040

Information

Type -
Description -
Location Contig649: 33694-41167
Sequence    

Annotation

kegg
ID rcu:RCOM_0053600
description dynamin, putative
nr
ID XP_012072311.1
description PREDICTED: dynamin-related protein 1C [Jatropha curcas]
swissprot
ID Q9FNX5
description Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1
trembl
ID A0A067L0V3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04763 PE=3 SV=1
Gene Ontology
ID GO:0005739
description dynamin-related protein 1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52476: 39415-39674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_040 0.0 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
2 Hb_000107_350 0.1024740861 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
3 Hb_003935_070 0.1045571068 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_000808_150 0.1180488055 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
5 Hb_000077_310 0.1249400529 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
6 Hb_000749_020 0.1268164341 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
7 Hb_000805_010 0.1276280072 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
8 Hb_001369_010 0.1312292173 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
9 Hb_002759_220 0.133636973 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
10 Hb_048476_140 0.1349087005 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
11 Hb_004041_050 0.1390011067 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
12 Hb_000086_210 0.139428711 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000139_300 0.1414048045 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
14 Hb_002817_040 0.1415367106 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
15 Hb_005563_010 0.1415438953 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
16 Hb_003226_250 0.141715318 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
17 Hb_002182_020 0.1453981747 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_121089_050 0.1462902137 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001180_010 0.1478750051 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
20 Hb_161396_010 0.1485446279 - - hypothetical protein F383_26394 [Gossypium arboreum]

Gene co-expression network

sample Hb_000649_040 Hb_000649_040 Hb_000107_350 Hb_000107_350 Hb_000649_040--Hb_000107_350 Hb_003935_070 Hb_003935_070 Hb_000649_040--Hb_003935_070 Hb_000808_150 Hb_000808_150 Hb_000649_040--Hb_000808_150 Hb_000077_310 Hb_000077_310 Hb_000649_040--Hb_000077_310 Hb_000749_020 Hb_000749_020 Hb_000649_040--Hb_000749_020 Hb_000805_010 Hb_000805_010 Hb_000649_040--Hb_000805_010 Hb_000107_350--Hb_000077_310 Hb_011310_040 Hb_011310_040 Hb_000107_350--Hb_011310_040 Hb_000107_350--Hb_000808_150 Hb_003226_250 Hb_003226_250 Hb_000107_350--Hb_003226_250 Hb_004055_020 Hb_004055_020 Hb_000107_350--Hb_004055_020 Hb_003935_070--Hb_000805_010 Hb_000108_150 Hb_000108_150 Hb_003935_070--Hb_000108_150 Hb_015141_010 Hb_015141_010 Hb_003935_070--Hb_015141_010 Hb_003935_070--Hb_000749_020 Hb_002759_220 Hb_002759_220 Hb_003935_070--Hb_002759_220 Hb_000808_150--Hb_000077_310 Hb_000139_300 Hb_000139_300 Hb_000808_150--Hb_000139_300 Hb_000808_150--Hb_000749_020 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000327_360 Hb_000327_360 Hb_000808_150--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_000808_150--Hb_161396_010 Hb_000417_380 Hb_000417_380 Hb_000077_310--Hb_000417_380 Hb_000077_310--Hb_000139_300 Hb_000580_110 Hb_000580_110 Hb_000077_310--Hb_000580_110 Hb_000077_310--Hb_003226_250 Hb_002817_040 Hb_002817_040 Hb_000749_020--Hb_002817_040 Hb_000086_210 Hb_000086_210 Hb_000749_020--Hb_000086_210 Hb_002759_120 Hb_002759_120 Hb_000749_020--Hb_002759_120 Hb_005074_040 Hb_005074_040 Hb_000749_020--Hb_005074_040 Hb_007904_060 Hb_007904_060 Hb_000749_020--Hb_007904_060 Hb_000805_010--Hb_015141_010 Hb_000805_010--Hb_002759_220 Hb_000805_010--Hb_002817_040 Hb_002235_110 Hb_002235_110 Hb_000805_010--Hb_002235_110 Hb_000395_010 Hb_000395_010 Hb_000805_010--Hb_000395_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.508143 0.39767 5.82796 10.3012 0.339236 0.316283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47837 0.969426 1.16174 1.66079 9.12637

CAGE analysis