Hb_002817_040

Information

Type -
Description -
Location Contig2817: 69633-82545
Sequence    

Annotation

kegg
ID cic:CICLE_v10027716mg
description hypothetical protein
nr
ID XP_012067192.1
description PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
swissprot
ID Q6S001
description Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1
trembl
ID A0A067LB84
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_26753 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-related protein 11 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29477: 69295-69774 , PASA_asmbl_29480: 73626-74925 , PASA_asmbl_29481: 74938-82506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002817_040 0.0 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
2 Hb_001369_100 0.0903655908 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
3 Hb_009079_050 0.0905472174 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
4 Hb_000749_020 0.0936770539 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
5 Hb_000108_150 0.0999454814 - - alpha/beta hydrolase, putative [Ricinus communis]
6 Hb_000612_090 0.1037017799 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
7 Hb_002028_180 0.1098053493 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_004242_170 0.110809314 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
9 Hb_000441_050 0.1145527794 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
10 Hb_001195_660 0.1163758283 - - metalloendopeptidase, putative [Ricinus communis]
11 Hb_007904_060 0.119348919 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
12 Hb_000805_010 0.1199228839 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
13 Hb_003935_070 0.1215396066 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_071079_020 0.1242924463 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
15 Hb_001369_010 0.1244672206 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
16 Hb_000834_080 0.1262952747 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
17 Hb_026549_070 0.1296906097 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
18 Hb_000139_300 0.131752722 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
19 Hb_158092_100 0.1336599476 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
20 Hb_000099_170 0.1350487086 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]

Gene co-expression network

sample Hb_002817_040 Hb_002817_040 Hb_001369_100 Hb_001369_100 Hb_002817_040--Hb_001369_100 Hb_009079_050 Hb_009079_050 Hb_002817_040--Hb_009079_050 Hb_000749_020 Hb_000749_020 Hb_002817_040--Hb_000749_020 Hb_000108_150 Hb_000108_150 Hb_002817_040--Hb_000108_150 Hb_000612_090 Hb_000612_090 Hb_002817_040--Hb_000612_090 Hb_002028_180 Hb_002028_180 Hb_002817_040--Hb_002028_180 Hb_001369_100--Hb_009079_050 Hb_005563_010 Hb_005563_010 Hb_001369_100--Hb_005563_010 Hb_001628_120 Hb_001628_120 Hb_001369_100--Hb_001628_120 Hb_000096_190 Hb_000096_190 Hb_001369_100--Hb_000096_190 Hb_000139_300 Hb_000139_300 Hb_001369_100--Hb_000139_300 Hb_026549_070 Hb_026549_070 Hb_009079_050--Hb_026549_070 Hb_009079_050--Hb_000139_300 Hb_002164_020 Hb_002164_020 Hb_009079_050--Hb_002164_020 Hb_001195_660 Hb_001195_660 Hb_009079_050--Hb_001195_660 Hb_000086_210 Hb_000086_210 Hb_000749_020--Hb_000086_210 Hb_000808_150 Hb_000808_150 Hb_000749_020--Hb_000808_150 Hb_002759_120 Hb_002759_120 Hb_000749_020--Hb_002759_120 Hb_005074_040 Hb_005074_040 Hb_000749_020--Hb_005074_040 Hb_007904_060 Hb_007904_060 Hb_000749_020--Hb_007904_060 Hb_000061_250 Hb_000061_250 Hb_000108_150--Hb_000061_250 Hb_000045_050 Hb_000045_050 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_005181_120 Hb_005181_120 Hb_000108_150--Hb_005181_120 Hb_000264_280 Hb_000264_280 Hb_000108_150--Hb_000264_280 Hb_000108_150--Hb_007904_060 Hb_002662_110 Hb_002662_110 Hb_000612_090--Hb_002662_110 Hb_074197_030 Hb_074197_030 Hb_000612_090--Hb_074197_030 Hb_002235_110 Hb_002235_110 Hb_000612_090--Hb_002235_110 Hb_000441_050 Hb_000441_050 Hb_000612_090--Hb_000441_050 Hb_005977_060 Hb_005977_060 Hb_000612_090--Hb_005977_060 Hb_119044_010 Hb_119044_010 Hb_002028_180--Hb_119044_010 Hb_002028_180--Hb_000612_090 Hb_000805_010 Hb_000805_010 Hb_002028_180--Hb_000805_010 Hb_003935_070 Hb_003935_070 Hb_002028_180--Hb_003935_070 Hb_000616_030 Hb_000616_030 Hb_002028_180--Hb_000616_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06126 2.01979 12.1573 15.5542 2.40003 1.06651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06188 2.32331 2.09687 3.15078 20.8387

CAGE analysis