Hb_074197_030

Information

Type -
Description -
Location Contig74197: 30203-35276
Sequence    

Annotation

kegg
ID tcc:TCM_016083
description Photolyase 1 isoform 1
nr
ID CBI22143.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9SB00
description Deoxyribodipyrimidine photo-lyase OS=Arabidopsis thaliana GN=PHR1 PE=2 SV=1
trembl
ID A5BUB1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026088 PE=4 SV=1
Gene Ontology
ID GO:0003904
description deoxyribodipyrimidine photo-lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56470: 30238-35423 , PASA_asmbl_56471: 30607-35268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074197_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000352_280 0.0898180173 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
3 Hb_000612_090 0.0946948286 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
4 Hb_015141_010 0.10109606 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
5 Hb_002235_110 0.106099381 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
6 Hb_172426_060 0.106749644 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
7 Hb_008725_090 0.1108360356 - - PREDICTED: uncharacterized protein LOC105642581 [Jatropha curcas]
8 Hb_000032_610 0.1197995783 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
9 Hb_005276_070 0.120520221 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
10 Hb_000866_020 0.1228019744 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
11 Hb_002662_110 0.1228028497 - - Kinesin heavy chain, putative [Ricinus communis]
12 Hb_002949_020 0.1232683429 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
13 Hb_000054_030 0.123891417 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
14 Hb_003053_070 0.1250359568 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
15 Hb_000019_080 0.1277555462 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
16 Hb_004096_210 0.128658873 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
17 Hb_022137_050 0.1291170315 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
18 Hb_005493_010 0.1327722841 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
19 Hb_000684_200 0.1339906585 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
20 Hb_001278_090 0.1368552418 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]

Gene co-expression network

sample Hb_074197_030 Hb_074197_030 Hb_000352_280 Hb_000352_280 Hb_074197_030--Hb_000352_280 Hb_000612_090 Hb_000612_090 Hb_074197_030--Hb_000612_090 Hb_015141_010 Hb_015141_010 Hb_074197_030--Hb_015141_010 Hb_002235_110 Hb_002235_110 Hb_074197_030--Hb_002235_110 Hb_172426_060 Hb_172426_060 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090 Hb_000352_280--Hb_172426_060 Hb_000019_080 Hb_000019_080 Hb_000352_280--Hb_000019_080 Hb_009393_130 Hb_009393_130 Hb_000352_280--Hb_009393_130 Hb_000352_280--Hb_015141_010 Hb_010557_010 Hb_010557_010 Hb_000352_280--Hb_010557_010 Hb_002662_110 Hb_002662_110 Hb_000612_090--Hb_002662_110 Hb_000612_090--Hb_002235_110 Hb_000441_050 Hb_000441_050 Hb_000612_090--Hb_000441_050 Hb_002817_040 Hb_002817_040 Hb_000612_090--Hb_002817_040 Hb_005977_060 Hb_005977_060 Hb_000612_090--Hb_005977_060 Hb_022137_050 Hb_022137_050 Hb_015141_010--Hb_022137_050 Hb_015141_010--Hb_172426_060 Hb_000805_010 Hb_000805_010 Hb_015141_010--Hb_000805_010 Hb_003935_070 Hb_003935_070 Hb_015141_010--Hb_003935_070 Hb_002949_020 Hb_002949_020 Hb_002235_110--Hb_002949_020 Hb_000054_030 Hb_000054_030 Hb_002235_110--Hb_000054_030 Hb_005276_070 Hb_005276_070 Hb_002235_110--Hb_005276_070 Hb_002235_110--Hb_000805_010 Hb_002811_250 Hb_002811_250 Hb_172426_060--Hb_002811_250 Hb_172426_060--Hb_000019_080 Hb_032631_030 Hb_032631_030 Hb_172426_060--Hb_032631_030 Hb_000679_080 Hb_000679_080 Hb_172426_060--Hb_000679_080 Hb_008725_090--Hb_015141_010 Hb_041692_010 Hb_041692_010 Hb_008725_090--Hb_041692_010 Hb_000392_260 Hb_000392_260 Hb_008725_090--Hb_000392_260 Hb_008725_090--Hb_000352_280 Hb_000032_610 Hb_000032_610 Hb_008725_090--Hb_000032_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.382151 1.71715 19.381 15.1109 0.429934 0.577761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.907048 1.37762 1.19794 6.94944 27.9349

CAGE analysis