Hb_032631_030

Information

Type -
Description -
Location Contig32631: 9766-12799
Sequence    

Annotation

kegg
ID rcu:RCOM_0468100
description phosphatidic acid phosphatase, putative (EC:1.3.1.74)
nr
ID XP_002528074.1
description phosphatidic acid phosphatase, putative [Ricinus communis]
swissprot
ID Q8LFD1
description Putative lipid phosphate phosphatase 3, chloroplastic OS=Arabidopsis thaliana GN=LPP3 PE=2 SV=1
trembl
ID B9SQ05
description Phosphatidic acid phosphatase, putative OS=Ricinus communis GN=RCOM_0468100 PE=4 SV=1
Gene Ontology
ID GO:0005887
description lipid phosphate phosphatase chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34322: 9878-16710 , PASA_asmbl_34323: 9883-12807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032631_030 0.0 - - phosphatidic acid phosphatase, putative [Ricinus communis]
2 Hb_009692_040 0.0905312841 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000108_150 0.0955465543 - - alpha/beta hydrolase, putative [Ricinus communis]
4 Hb_172426_060 0.0969205797 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
5 Hb_000061_250 0.1007745129 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
6 Hb_002662_110 0.1031064272 - - Kinesin heavy chain, putative [Ricinus communis]
7 Hb_000441_050 0.1051254812 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
8 Hb_000684_200 0.1103785116 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_005977_060 0.1110657691 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005181_120 0.1114644156 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000679_080 0.1133399482 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
12 Hb_007982_040 0.113715579 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
13 Hb_004242_170 0.1137598184 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
14 Hb_001365_030 0.1158873185 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
15 Hb_002044_160 0.1179605432 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
16 Hb_000352_280 0.1183549952 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
17 Hb_002811_250 0.1220491812 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
18 Hb_010098_040 0.1223388144 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
19 Hb_000612_090 0.1248237816 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
20 Hb_010721_020 0.1251296999 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_032631_030 Hb_032631_030 Hb_009692_040 Hb_009692_040 Hb_032631_030--Hb_009692_040 Hb_000108_150 Hb_000108_150 Hb_032631_030--Hb_000108_150 Hb_172426_060 Hb_172426_060 Hb_032631_030--Hb_172426_060 Hb_000061_250 Hb_000061_250 Hb_032631_030--Hb_000061_250 Hb_002662_110 Hb_002662_110 Hb_032631_030--Hb_002662_110 Hb_000441_050 Hb_000441_050 Hb_032631_030--Hb_000441_050 Hb_007982_040 Hb_007982_040 Hb_009692_040--Hb_007982_040 Hb_004242_170 Hb_004242_170 Hb_009692_040--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_009692_040--Hb_001053_020 Hb_005977_060 Hb_005977_060 Hb_009692_040--Hb_005977_060 Hb_009692_040--Hb_000441_050 Hb_000108_150--Hb_000061_250 Hb_000045_050 Hb_000045_050 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_005181_120 Hb_005181_120 Hb_000108_150--Hb_005181_120 Hb_000264_280 Hb_000264_280 Hb_000108_150--Hb_000264_280 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060 Hb_000352_280 Hb_000352_280 Hb_172426_060--Hb_000352_280 Hb_002811_250 Hb_002811_250 Hb_172426_060--Hb_002811_250 Hb_000019_080 Hb_000019_080 Hb_172426_060--Hb_000019_080 Hb_000679_080 Hb_000679_080 Hb_172426_060--Hb_000679_080 Hb_015141_010 Hb_015141_010 Hb_172426_060--Hb_015141_010 Hb_000061_250--Hb_000045_050 Hb_000544_080 Hb_000544_080 Hb_000061_250--Hb_000544_080 Hb_000061_250--Hb_000264_280 Hb_003948_020 Hb_003948_020 Hb_000061_250--Hb_003948_020 Hb_000390_210 Hb_000390_210 Hb_000061_250--Hb_000390_210 Hb_004994_330 Hb_004994_330 Hb_002662_110--Hb_004994_330 Hb_005276_070 Hb_005276_070 Hb_002662_110--Hb_005276_070 Hb_000612_090 Hb_000612_090 Hb_002662_110--Hb_000612_090 Hb_003416_020 Hb_003416_020 Hb_002662_110--Hb_003416_020 Hb_002662_110--Hb_000679_080 Hb_000441_050--Hb_005977_060 Hb_000441_050--Hb_004242_170 Hb_000441_050--Hb_001053_020 Hb_001365_020 Hb_001365_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_000441_050--Hb_005276_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19447 5.28048 29.625 21.7009 3.39345 0.892356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73735 1.18154 1.79977 6.60108 41.8984

CAGE analysis