Hb_172426_060

Information

Type -
Description -
Location Contig172426: 34938-41248
Sequence    

Annotation

kegg
ID rcu:RCOM_1288560
description brca1 associated ring domain, putative
nr
ID XP_012072188.1
description PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
swissprot
ID Q8RXD4
description Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana GN=BRCA1 PE=1 SV=1
trembl
ID A0A067KSP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04671 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein breast cancer susceptibility 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16299: 35414-36475 , PASA_asmbl_16300: 36480-36908 , PASA_asmbl_16302: 38426-39510 , PASA_asmbl_16303: 39628-40141 , PASA_asmbl_16304: 41933-43788
cDNA
(Sanger)
(ID:Location)		 005_B10.ab1: 41978-43511

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172426_060 0.0 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
2 Hb_000352_280 0.0561805365 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
3 Hb_002811_250 0.0942293268 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
4 Hb_000019_080 0.0945825941 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
5 Hb_032631_030 0.0969205797 - - phosphatidic acid phosphatase, putative [Ricinus communis]
6 Hb_000679_080 0.103771401 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
7 Hb_015141_010 0.1051637416 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
8 Hb_074197_030 0.106749644 - - unnamed protein product [Vitis vinifera]
9 Hb_000684_200 0.1096814242 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_002662_110 0.1100234761 - - Kinesin heavy chain, putative [Ricinus communis]
11 Hb_009393_130 0.11196738 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
12 Hb_000612_090 0.1127166019 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
13 Hb_000045_050 0.1143626587 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
14 Hb_000108_150 0.1146026237 - - alpha/beta hydrolase, putative [Ricinus communis]
15 Hb_001365_030 0.1153346316 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
16 Hb_010557_010 0.1154818181 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
17 Hb_005181_120 0.1162844683 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000061_250 0.1170622734 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
19 Hb_000803_170 0.1196184358 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
20 Hb_005488_190 0.1196250909 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]

Gene co-expression network

sample Hb_172426_060 Hb_172426_060 Hb_000352_280 Hb_000352_280 Hb_172426_060--Hb_000352_280 Hb_002811_250 Hb_002811_250 Hb_172426_060--Hb_002811_250 Hb_000019_080 Hb_000019_080 Hb_172426_060--Hb_000019_080 Hb_032631_030 Hb_032631_030 Hb_172426_060--Hb_032631_030 Hb_000679_080 Hb_000679_080 Hb_172426_060--Hb_000679_080 Hb_015141_010 Hb_015141_010 Hb_172426_060--Hb_015141_010 Hb_000352_280--Hb_000019_080 Hb_074197_030 Hb_074197_030 Hb_000352_280--Hb_074197_030 Hb_009393_130 Hb_009393_130 Hb_000352_280--Hb_009393_130 Hb_000352_280--Hb_015141_010 Hb_010557_010 Hb_010557_010 Hb_000352_280--Hb_010557_010 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_002811_250--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_002811_250--Hb_000803_170 Hb_005181_120 Hb_005181_120 Hb_002811_250--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_002811_250--Hb_010098_040 Hb_002811_250--Hb_000679_080 Hb_004837_100 Hb_004837_100 Hb_000019_080--Hb_004837_100 Hb_000019_080--Hb_000803_170 Hb_001579_280 Hb_001579_280 Hb_000019_080--Hb_001579_280 Hb_000019_080--Hb_010557_010 Hb_009692_040 Hb_009692_040 Hb_032631_030--Hb_009692_040 Hb_000108_150 Hb_000108_150 Hb_032631_030--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_032631_030--Hb_000061_250 Hb_002662_110 Hb_002662_110 Hb_032631_030--Hb_002662_110 Hb_000441_050 Hb_000441_050 Hb_032631_030--Hb_000441_050 Hb_000679_080--Hb_005181_120 Hb_000679_080--Hb_010098_040 Hb_003416_020 Hb_003416_020 Hb_000679_080--Hb_003416_020 Hb_000516_080 Hb_000516_080 Hb_000679_080--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_000679_080--Hb_007982_040 Hb_022137_050 Hb_022137_050 Hb_015141_010--Hb_022137_050 Hb_015141_010--Hb_074197_030 Hb_000805_010 Hb_000805_010 Hb_015141_010--Hb_000805_010 Hb_003935_070 Hb_003935_070 Hb_015141_010--Hb_003935_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.461428 0.520339 6.72448 3.75504 0.276023 0.343074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.407281 0.240381 0.403131 1.32197 8.6303

CAGE analysis