Hb_000019_080

Information

Type transcription factor
Description TF Family: bHLH
Location Contig19: 53141-57163
Sequence    

Annotation

kegg
ID tcc:TCM_017336
description Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
nr
ID XP_012067340.1
description PREDICTED: transcription factor ICE1 [Jatropha curcas]
swissprot
ID Q9LSE2
description Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
trembl
ID A0A067L072
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26864 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor ice1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18874: 53267-57271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_080 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
2 Hb_004837_100 0.0790713474 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
3 Hb_000352_280 0.0795149664 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
4 Hb_000803_170 0.0945171412 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
5 Hb_172426_060 0.0945825941 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
6 Hb_001579_280 0.1013543163 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
7 Hb_010557_010 0.1021409446 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
8 Hb_002811_250 0.1106605368 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
9 Hb_000684_200 0.1115019084 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_003053_070 0.1134426313 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
11 Hb_005563_040 0.119662868 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
12 Hb_015141_010 0.1230203797 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
13 Hb_022137_050 0.1255388197 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
14 Hb_000089_140 0.1263187528 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
15 Hb_004236_040 0.126577385 - - biotin carboxyl carrier protein [Vernicia fordii]
16 Hb_074197_030 0.1277555462 - - unnamed protein product [Vitis vinifera]
17 Hb_002411_100 0.1289790727 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
18 Hb_009296_030 0.1294411427 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
19 Hb_047418_010 0.1303325894 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
20 Hb_005181_120 0.1316797675 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000019_080 Hb_000019_080 Hb_004837_100 Hb_004837_100 Hb_000019_080--Hb_004837_100 Hb_000352_280 Hb_000352_280 Hb_000019_080--Hb_000352_280 Hb_000803_170 Hb_000803_170 Hb_000019_080--Hb_000803_170 Hb_172426_060 Hb_172426_060 Hb_000019_080--Hb_172426_060 Hb_001579_280 Hb_001579_280 Hb_000019_080--Hb_001579_280 Hb_010557_010 Hb_010557_010 Hb_000019_080--Hb_010557_010 Hb_003053_070 Hb_003053_070 Hb_004837_100--Hb_003053_070 Hb_000684_200 Hb_000684_200 Hb_004837_100--Hb_000684_200 Hb_000395_010 Hb_000395_010 Hb_004837_100--Hb_000395_010 Hb_004837_100--Hb_001579_280 Hb_004162_270 Hb_004162_270 Hb_004837_100--Hb_004162_270 Hb_000352_280--Hb_172426_060 Hb_074197_030 Hb_074197_030 Hb_000352_280--Hb_074197_030 Hb_009393_130 Hb_009393_130 Hb_000352_280--Hb_009393_130 Hb_015141_010 Hb_015141_010 Hb_000352_280--Hb_015141_010 Hb_000352_280--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_000803_170--Hb_002811_250 Hb_000803_170--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_000803_170--Hb_005563_040 Hb_000193_220 Hb_000193_220 Hb_000803_170--Hb_000193_220 Hb_000089_140 Hb_000089_140 Hb_000803_170--Hb_000089_140 Hb_000803_170--Hb_001579_280 Hb_172426_060--Hb_002811_250 Hb_032631_030 Hb_032631_030 Hb_172426_060--Hb_032631_030 Hb_000679_080 Hb_000679_080 Hb_172426_060--Hb_000679_080 Hb_172426_060--Hb_015141_010 Hb_001579_280--Hb_005563_040 Hb_001579_280--Hb_000089_140 Hb_002811_310 Hb_002811_310 Hb_001579_280--Hb_002811_310 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_010557_010--Hb_002811_250 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.889724 1.38282 20.8662 9.71982 0.326941 0.906562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30018 1.61027 3.0845 3.86866 29.0948

CAGE analysis