Hb_009393_130

Information

Type -
Description -
Location Contig9393: 91162-93309
Sequence    

Annotation

kegg
ID cic:CICLE_v10009629mg
description hypothetical protein
nr
ID XP_012077162.1
description PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID V4WHL9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009629mg PE=4 SV=1
Gene Ontology
ID GO:0009507
description eukaryotic initiation factor 4f subunit p150 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63056: 90930-112655 , PASA_asmbl_63057: 90930-92431 , PASA_asmbl_63059: 92032-92437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_130 0.0 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
2 Hb_003680_060 0.0775841284 - - hypothetical protein VITISV_022322 [Vitis vinifera]
3 Hb_007803_040 0.0792390296 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
4 Hb_003605_060 0.0807991779 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
5 Hb_009838_070 0.0816972979 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
6 Hb_010557_010 0.085319044 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
7 Hb_002811_250 0.0863750436 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
8 Hb_002485_050 0.089597695 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
9 Hb_000327_260 0.0922424297 - - conserved hypothetical protein [Ricinus communis]
10 Hb_058620_080 0.0940422548 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
11 Hb_004096_210 0.0941332696 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
12 Hb_005488_190 0.0956685356 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_000352_280 0.0991540476 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
14 Hb_000544_080 0.1011072257 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
15 Hb_091433_050 0.1011381546 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
16 Hb_000856_280 0.1017522603 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
17 Hb_004650_050 0.1055500986 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
18 Hb_000618_110 0.1064381891 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
19 Hb_000045_050 0.1069692049 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
20 Hb_000061_250 0.1070716851 - - hypothetical protein JCGZ_11665 [Jatropha curcas]

Gene co-expression network

sample Hb_009393_130 Hb_009393_130 Hb_003680_060 Hb_003680_060 Hb_009393_130--Hb_003680_060 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250 Hb_003680_060--Hb_009838_070 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_004650_050 Hb_004650_050 Hb_003680_060--Hb_004650_050 Hb_091433_050 Hb_091433_050 Hb_003680_060--Hb_091433_050 Hb_000711_030 Hb_000711_030 Hb_003680_060--Hb_000711_030 Hb_002485_050 Hb_002485_050 Hb_007803_040--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_007803_040--Hb_000856_280 Hb_005488_190 Hb_005488_190 Hb_007803_040--Hb_005488_190 Hb_007803_040--Hb_003605_060 Hb_000544_070 Hb_000544_070 Hb_007803_040--Hb_000544_070 Hb_003605_060--Hb_002485_050 Hb_003605_060--Hb_000856_280 Hb_074548_010 Hb_074548_010 Hb_003605_060--Hb_074548_010 Hb_002636_030 Hb_002636_030 Hb_003605_060--Hb_002636_030 Hb_009838_070--Hb_004650_050 Hb_000327_260 Hb_000327_260 Hb_009838_070--Hb_000327_260 Hb_009838_070--Hb_000711_030 Hb_004096_210 Hb_004096_210 Hb_009838_070--Hb_004096_210 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_010557_010--Hb_002811_250 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_002811_250--Hb_000803_170 Hb_005181_120 Hb_005181_120 Hb_002811_250--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.998247 5.26404 44.1378 21.1809 1.33953 2.0645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61307 2.7369 0.956245 3.38182 57.777

CAGE analysis