Hb_000856_280

Information

Type -
Description -
Location Contig856: 251083-254030
Sequence    

Annotation

kegg
ID vvi:100250168
description uncharacterized LOC100250168
nr
ID XP_012080204.1
description PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KG54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11581 PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein LOC105640491

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60598: 251033-252047 , PASA_asmbl_60599: 253561-254276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_280 0.0 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
2 Hb_003605_060 0.0683222318 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
3 Hb_002485_050 0.0760068061 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
4 Hb_007803_040 0.0780086395 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
5 Hb_005523_040 0.0906683715 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
6 Hb_005210_010 0.0914598059 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
7 Hb_001195_290 0.0938129681 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
8 Hb_002636_030 0.0944158127 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
9 Hb_009393_130 0.1017522603 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
10 Hb_000089_140 0.1022743695 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
11 Hb_074548_010 0.1034358795 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001517_010 0.1034903339 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002811_250 0.105826717 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
14 Hb_000544_070 0.1072588293 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
15 Hb_009296_030 0.1089480834 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
16 Hb_000317_180 0.1090732172 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
17 Hb_000618_110 0.1117103888 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
18 Hb_005348_120 0.1126365732 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
19 Hb_006472_040 0.1131657906 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
20 Hb_002477_020 0.1140459052 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]

Gene co-expression network

sample Hb_000856_280 Hb_000856_280 Hb_003605_060 Hb_003605_060 Hb_000856_280--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_000856_280--Hb_002485_050 Hb_007803_040 Hb_007803_040 Hb_000856_280--Hb_007803_040 Hb_005523_040 Hb_005523_040 Hb_000856_280--Hb_005523_040 Hb_005210_010 Hb_005210_010 Hb_000856_280--Hb_005210_010 Hb_001195_290 Hb_001195_290 Hb_000856_280--Hb_001195_290 Hb_003605_060--Hb_002485_050 Hb_074548_010 Hb_074548_010 Hb_003605_060--Hb_074548_010 Hb_009393_130 Hb_009393_130 Hb_003605_060--Hb_009393_130 Hb_003605_060--Hb_007803_040 Hb_002636_030 Hb_002636_030 Hb_003605_060--Hb_002636_030 Hb_002485_050--Hb_007803_040 Hb_000544_070 Hb_000544_070 Hb_002485_050--Hb_000544_070 Hb_002485_050--Hb_074548_010 Hb_002485_050--Hb_009393_130 Hb_007803_040--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_007803_040--Hb_005488_190 Hb_007803_040--Hb_000544_070 Hb_001517_010 Hb_001517_010 Hb_005523_040--Hb_001517_010 Hb_005523_040--Hb_005210_010 Hb_005523_040--Hb_074548_010 Hb_005348_120 Hb_005348_120 Hb_005523_040--Hb_005348_120 Hb_005523_040--Hb_001195_290 Hb_000049_100 Hb_000049_100 Hb_005210_010--Hb_000049_100 Hb_000390_160 Hb_000390_160 Hb_005210_010--Hb_000390_160 Hb_005210_010--Hb_001195_290 Hb_006970_030 Hb_006970_030 Hb_005210_010--Hb_006970_030 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_001195_290--Hb_001517_010 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_134949_010 Hb_134949_010 Hb_001195_290--Hb_134949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02049 10.4646 74.2214 31.1721 2.68204 2.3232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52755 4.60599 2.9125 7.11811 137.992

CAGE analysis