Hb_001268_170

Information

Type -
Description -
Location Contig1268: 167987-170398
Sequence    

Annotation

kegg
ID rcu:RCOM_1446530
description glycerophosphodiester phosphodiesterase, putative
nr
ID XP_002512887.1
description glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
swissprot
ID Q9SGA2
description Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic OS=Arabidopsis thaliana GN=GDPD1 PE=1 SV=1
trembl
ID B9RH28
description Glycerophosphodiester phosphodiesterase, putative OS=Ricinus communis GN=RCOM_1446530 PE=4 SV=1
Gene Ontology
ID GO:0008081
description glycerophosphodiester phosphodiesterase gde1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08106: 167903-169048 , PASA_asmbl_08107: 167903-168493 , PASA_asmbl_08108: 170223-170421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_170 0.0 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
2 Hb_011282_040 0.0740437916 - - Sec14 cytosolic factor, putative [Ricinus communis]
3 Hb_000390_160 0.0922027967 - - PREDICTED: adenosine kinase [Jatropha curcas]
4 Hb_001195_290 0.0924465316 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
5 Hb_001141_340 0.102666677 - - PREDICTED: cysteine synthase [Jatropha curcas]
6 Hb_005210_010 0.1071007345 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
7 Hb_002071_030 0.1153470938 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
8 Hb_003602_100 0.1179896419 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_001517_010 0.1181246834 - - conserved hypothetical protein [Ricinus communis]
10 Hb_134949_010 0.1215554172 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
11 Hb_000049_100 0.1235058212 - - Photosystem II reaction center W protein, putative [Ricinus communis]
12 Hb_003120_020 0.1241258768 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
13 Hb_000069_760 0.1305701966 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
14 Hb_003020_120 0.1335740115 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
15 Hb_021531_010 0.1366018504 - - receptor-kinase, putative [Ricinus communis]
16 Hb_009296_030 0.136675133 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
17 Hb_006198_030 0.1371221512 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001691_180 0.1373154829 - - phosphoglycerate mutase, putative [Ricinus communis]
19 Hb_005523_040 0.1375154139 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
20 Hb_002477_020 0.1375646256 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_170 Hb_001268_170 Hb_011282_040 Hb_011282_040 Hb_001268_170--Hb_011282_040 Hb_000390_160 Hb_000390_160 Hb_001268_170--Hb_000390_160 Hb_001195_290 Hb_001195_290 Hb_001268_170--Hb_001195_290 Hb_001141_340 Hb_001141_340 Hb_001268_170--Hb_001141_340 Hb_005210_010 Hb_005210_010 Hb_001268_170--Hb_005210_010 Hb_002071_030 Hb_002071_030 Hb_001268_170--Hb_002071_030 Hb_011282_040--Hb_000390_160 Hb_011282_040--Hb_001195_290 Hb_011282_040--Hb_001141_340 Hb_002477_020 Hb_002477_020 Hb_011282_040--Hb_002477_020 Hb_011282_040--Hb_005210_010 Hb_000069_760 Hb_000069_760 Hb_000390_160--Hb_000069_760 Hb_000049_100 Hb_000049_100 Hb_000390_160--Hb_000049_100 Hb_003777_080 Hb_003777_080 Hb_000390_160--Hb_003777_080 Hb_000390_160--Hb_001141_340 Hb_001958_060 Hb_001958_060 Hb_000390_160--Hb_001958_060 Hb_000390_160--Hb_005210_010 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_001517_010 Hb_001517_010 Hb_001195_290--Hb_001517_010 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_001195_290--Hb_005210_010 Hb_134949_010 Hb_134949_010 Hb_001195_290--Hb_134949_010 Hb_001141_340--Hb_000069_760 Hb_003120_020 Hb_003120_020 Hb_001141_340--Hb_003120_020 Hb_002592_040 Hb_002592_040 Hb_001141_340--Hb_002592_040 Hb_004899_190 Hb_004899_190 Hb_001141_340--Hb_004899_190 Hb_005523_040 Hb_005523_040 Hb_005210_010--Hb_005523_040 Hb_005210_010--Hb_000049_100 Hb_000856_280 Hb_000856_280 Hb_005210_010--Hb_000856_280 Hb_006970_030 Hb_006970_030 Hb_005210_010--Hb_006970_030 Hb_002071_030--Hb_134949_010 Hb_000174_080 Hb_000174_080 Hb_002071_030--Hb_000174_080 Hb_003602_100 Hb_003602_100 Hb_002071_030--Hb_003602_100 Hb_002071_030--Hb_001195_290 Hb_002249_090 Hb_002249_090 Hb_002071_030--Hb_002249_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0900461 0.155442 5.12118 2.28952 0 0.0126511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.328688 0.310297 0.242487 0.15492 9.77282

CAGE analysis