Hb_011282_040

Information

Type -
Description -
Location Contig11282: 59630-64030
Sequence    

Annotation

kegg
ID rcu:RCOM_1448100
description Sec14 cytosolic factor, putative
nr
ID XP_002512942.1
description Sec14 cytosolic factor, putative [Ricinus communis]
swissprot
ID Q93ZE9
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 OS=Arabidopsis thaliana GN=SFH3 PE=2 SV=1
trembl
ID B9RH83
description Sec14 cytosolic factor, putative OS=Ricinus communis GN=RCOM_1448100 PE=4 SV=1
Gene Ontology
ID GO:0005794
description sec14-like 3 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03873: 59610-59719 , PASA_asmbl_03874: 59789-63430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011282_040 0.0 - - Sec14 cytosolic factor, putative [Ricinus communis]
2 Hb_001268_170 0.0740437916 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
3 Hb_000390_160 0.1046969328 - - PREDICTED: adenosine kinase [Jatropha curcas]
4 Hb_001195_290 0.1080416498 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
5 Hb_001141_340 0.1202693195 - - PREDICTED: cysteine synthase [Jatropha curcas]
6 Hb_002477_020 0.1261641687 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
7 Hb_005210_010 0.1262190145 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
8 Hb_022137_050 0.1283713005 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
9 Hb_009296_030 0.130203064 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
10 Hb_001517_010 0.1333792875 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000049_100 0.1355278223 - - Photosystem II reaction center W protein, putative [Ricinus communis]
12 Hb_002681_210 0.1360777906 - - PREDICTED: uncharacterized protein LOC105633686 [Jatropha curcas]
13 Hb_021531_010 0.1382894374 - - receptor-kinase, putative [Ricinus communis]
14 Hb_005523_040 0.1397578351 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
15 Hb_000525_070 0.1399438978 - - PREDICTED: WAT1-related protein At5g40240-like [Jatropha curcas]
16 Hb_000069_760 0.1404483058 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
17 Hb_003602_100 0.141295115 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
18 Hb_000076_070 0.1441723687 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
19 Hb_134949_010 0.1457938115 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
20 Hb_000856_280 0.1469598604 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]

Gene co-expression network

sample Hb_011282_040 Hb_011282_040 Hb_001268_170 Hb_001268_170 Hb_011282_040--Hb_001268_170 Hb_000390_160 Hb_000390_160 Hb_011282_040--Hb_000390_160 Hb_001195_290 Hb_001195_290 Hb_011282_040--Hb_001195_290 Hb_001141_340 Hb_001141_340 Hb_011282_040--Hb_001141_340 Hb_002477_020 Hb_002477_020 Hb_011282_040--Hb_002477_020 Hb_005210_010 Hb_005210_010 Hb_011282_040--Hb_005210_010 Hb_001268_170--Hb_000390_160 Hb_001268_170--Hb_001195_290 Hb_001268_170--Hb_001141_340 Hb_001268_170--Hb_005210_010 Hb_002071_030 Hb_002071_030 Hb_001268_170--Hb_002071_030 Hb_000069_760 Hb_000069_760 Hb_000390_160--Hb_000069_760 Hb_000049_100 Hb_000049_100 Hb_000390_160--Hb_000049_100 Hb_003777_080 Hb_003777_080 Hb_000390_160--Hb_003777_080 Hb_000390_160--Hb_001141_340 Hb_001958_060 Hb_001958_060 Hb_000390_160--Hb_001958_060 Hb_000390_160--Hb_005210_010 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_001517_010 Hb_001517_010 Hb_001195_290--Hb_001517_010 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_001195_290--Hb_005210_010 Hb_134949_010 Hb_134949_010 Hb_001195_290--Hb_134949_010 Hb_001141_340--Hb_000069_760 Hb_003120_020 Hb_003120_020 Hb_001141_340--Hb_003120_020 Hb_002592_040 Hb_002592_040 Hb_001141_340--Hb_002592_040 Hb_004899_190 Hb_004899_190 Hb_001141_340--Hb_004899_190 Hb_009296_030 Hb_009296_030 Hb_002477_020--Hb_009296_030 Hb_000317_180 Hb_000317_180 Hb_002477_020--Hb_000317_180 Hb_022137_050 Hb_022137_050 Hb_002477_020--Hb_022137_050 Hb_002477_020--Hb_134949_010 Hb_002477_020--Hb_001195_290 Hb_000029_330 Hb_000029_330 Hb_002477_020--Hb_000029_330 Hb_005523_040 Hb_005523_040 Hb_005210_010--Hb_005523_040 Hb_005210_010--Hb_000049_100 Hb_000856_280 Hb_000856_280 Hb_005210_010--Hb_000856_280 Hb_006970_030 Hb_006970_030 Hb_005210_010--Hb_006970_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125273 0.272365 7.32912 3.51042 0.010215 0.0095532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297738 1.0737 0.147721 0.264291 14.8956

CAGE analysis