Hb_000317_180

Information

Type -
Description -
Location Contig317: 125989-128902
Sequence    

Annotation

kegg
ID rcu:RCOM_1176570
description Protein THYLAKOID FORMATION1, chloroplast precursor, putative
nr
ID XP_012088365.1
description PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
swissprot
ID Q7XAB8
description Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1
trembl
ID A0A067JJR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25858 PE=3 SV=1
Gene Ontology
ID GO:0009528
description protein thylakoid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33372: 126109-128904
cDNA
(Sanger)
(ID:Location)		 038_M04.ab1: 126109-127536 , 046_K03.ab1: 126109-127514

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_180 0.0 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
2 Hb_002477_020 0.081210756 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
3 Hb_000089_140 0.0831111772 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
4 Hb_000029_330 0.0906373119 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
5 Hb_000803_170 0.0953490679 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
6 Hb_009296_030 0.0991578577 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
7 Hb_001266_160 0.0994216373 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
8 Hb_134949_010 0.0995905769 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
9 Hb_006472_040 0.1011230647 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
10 Hb_010721_020 0.1011626962 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
11 Hb_002811_250 0.101798726 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
12 Hb_000045_050 0.1031440906 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
13 Hb_000193_220 0.103588041 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
14 Hb_001195_290 0.1040384005 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
15 Hb_058620_080 0.1053135379 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
16 Hb_000856_280 0.1090732172 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
17 Hb_009393_130 0.1130350945 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
18 Hb_010098_040 0.1159368209 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
19 Hb_011649_010 0.1168495898 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
20 Hb_000032_390 0.1168787973 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_180 Hb_000317_180 Hb_002477_020 Hb_002477_020 Hb_000317_180--Hb_002477_020 Hb_000089_140 Hb_000089_140 Hb_000317_180--Hb_000089_140 Hb_000029_330 Hb_000029_330 Hb_000317_180--Hb_000029_330 Hb_000803_170 Hb_000803_170 Hb_000317_180--Hb_000803_170 Hb_009296_030 Hb_009296_030 Hb_000317_180--Hb_009296_030 Hb_001266_160 Hb_001266_160 Hb_000317_180--Hb_001266_160 Hb_002477_020--Hb_009296_030 Hb_022137_050 Hb_022137_050 Hb_002477_020--Hb_022137_050 Hb_134949_010 Hb_134949_010 Hb_002477_020--Hb_134949_010 Hb_001195_290 Hb_001195_290 Hb_002477_020--Hb_001195_290 Hb_002477_020--Hb_000029_330 Hb_000089_140--Hb_000803_170 Hb_002811_250 Hb_002811_250 Hb_000089_140--Hb_002811_250 Hb_000856_280 Hb_000856_280 Hb_000089_140--Hb_000856_280 Hb_010557_010 Hb_010557_010 Hb_000089_140--Hb_010557_010 Hb_058620_080 Hb_058620_080 Hb_000089_140--Hb_058620_080 Hb_000029_330--Hb_001266_160 Hb_000029_330--Hb_134949_010 Hb_002835_090 Hb_002835_090 Hb_000029_330--Hb_002835_090 Hb_000898_090 Hb_000898_090 Hb_000029_330--Hb_000898_090 Hb_004979_050 Hb_004979_050 Hb_000029_330--Hb_004979_050 Hb_000803_170--Hb_002811_250 Hb_000803_170--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_000803_170--Hb_005563_040 Hb_000193_220 Hb_000193_220 Hb_000803_170--Hb_000193_220 Hb_001579_280 Hb_001579_280 Hb_000803_170--Hb_001579_280 Hb_009296_030--Hb_022137_050 Hb_009296_030--Hb_134949_010 Hb_009296_030--Hb_000856_280 Hb_006472_040 Hb_006472_040 Hb_009296_030--Hb_006472_040 Hb_000359_070 Hb_000359_070 Hb_001266_160--Hb_000359_070 Hb_001266_160--Hb_004979_050 Hb_001266_160--Hb_134949_010 Hb_000359_160 Hb_000359_160 Hb_001266_160--Hb_000359_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.24611 15.1702 107.711 72.4157 7.2634 7.70517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.57077 11.4174 11.0485 8.30949 237.352

CAGE analysis