Hb_004979_050

Information

Type -
Description -
Location Contig4979: 22066-25199
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06330g
description hypothetical protein
nr
ID KDP42829.1
description hypothetical protein JCGZ_23771 [Jatropha curcas]
swissprot
ID Q9FLV4
description G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1
trembl
ID A0A067LFF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23771 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g67000 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45586: 23137-24033 , PASA_asmbl_45587: 24738-24959 , PASA_asmbl_45588: 24977-25233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004979_050 0.0 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
2 Hb_000679_320 0.0789700451 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
3 Hb_000359_160 0.0883800286 - - PREDICTED: protein CAJ1 [Jatropha curcas]
4 Hb_008112_020 0.0960655143 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
5 Hb_001266_160 0.0964016954 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
6 Hb_001517_010 0.102835289 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006472_040 0.1069921723 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
8 Hb_000029_330 0.1087051877 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
9 Hb_000359_070 0.1128491911 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
10 Hb_001195_290 0.1130431615 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
11 Hb_009393_140 0.1142676546 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
12 Hb_156850_020 0.1152287164 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
13 Hb_028960_010 0.1167120634 - - phosphoglycerate kinase, putative [Ricinus communis]
14 Hb_000227_100 0.1176776278 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
15 Hb_000317_180 0.1229220687 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
16 Hb_002814_010 0.1256914757 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
17 Hb_000367_220 0.1266109662 - - hypothetical protein RCOM_1470580 [Ricinus communis]
18 Hb_011900_020 0.1274861966 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
19 Hb_134949_010 0.1276941739 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
20 Hb_000107_540 0.1281239417 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]

Gene co-expression network

sample Hb_004979_050 Hb_004979_050 Hb_000679_320 Hb_000679_320 Hb_004979_050--Hb_000679_320 Hb_000359_160 Hb_000359_160 Hb_004979_050--Hb_000359_160 Hb_008112_020 Hb_008112_020 Hb_004979_050--Hb_008112_020 Hb_001266_160 Hb_001266_160 Hb_004979_050--Hb_001266_160 Hb_001517_010 Hb_001517_010 Hb_004979_050--Hb_001517_010 Hb_006472_040 Hb_006472_040 Hb_004979_050--Hb_006472_040 Hb_009393_140 Hb_009393_140 Hb_000679_320--Hb_009393_140 Hb_000679_320--Hb_006472_040 Hb_000679_320--Hb_000359_160 Hb_000107_540 Hb_000107_540 Hb_000679_320--Hb_000107_540 Hb_000679_320--Hb_008112_020 Hb_000359_160--Hb_009393_140 Hb_000723_320 Hb_000723_320 Hb_000359_160--Hb_000723_320 Hb_000359_070 Hb_000359_070 Hb_000359_160--Hb_000359_070 Hb_002814_010 Hb_002814_010 Hb_000359_160--Hb_002814_010 Hb_008112_020--Hb_006472_040 Hb_001195_290 Hb_001195_290 Hb_008112_020--Hb_001195_290 Hb_022693_010 Hb_022693_010 Hb_008112_020--Hb_022693_010 Hb_169383_010 Hb_169383_010 Hb_008112_020--Hb_169383_010 Hb_000029_330 Hb_000029_330 Hb_001266_160--Hb_000029_330 Hb_001266_160--Hb_000359_070 Hb_000317_180 Hb_000317_180 Hb_001266_160--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_001266_160--Hb_134949_010 Hb_001266_160--Hb_000359_160 Hb_001517_010--Hb_001195_290 Hb_001517_010--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_001517_010--Hb_005523_040 Hb_001517_010--Hb_134949_010 Hb_001584_210 Hb_001584_210 Hb_001517_010--Hb_001584_210 Hb_001691_180 Hb_001691_180 Hb_001517_010--Hb_001691_180 Hb_006472_040--Hb_001195_290 Hb_006472_040--Hb_169383_010 Hb_006472_040--Hb_000317_180 Hb_006472_040--Hb_009393_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54026 3.56342 15.756 15.5954 0.762487 0.440839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53321 1.34038 1.52217 1.79907 63.4825

CAGE analysis