Hb_002814_010

Information

Type -
Description -
Location Contig2814: 38650-54166
Sequence    

Annotation

kegg
ID rcu:RCOM_0701690
description adenylate kinase, putative (EC:2.7.4.3)
nr
ID XP_012071434.1
description PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
swissprot
ID Q8VYL1
description Adenylate kinase 5, chloroplastic OS=Arabidopsis thaliana GN=At5g35170 PE=1 SV=1
trembl
ID A0A067L3F6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03977 PE=3 SV=1
Gene Ontology
ID GO:0004017
description adenylate kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29457: 38713-54511 , PASA_asmbl_29458: 38713-54511
cDNA
(Sanger)
(ID:Location)		 004_A23.ab1: 38724-46039 , 050_I20.ab1: 38724-40950 , 053_N17.ab1: 38708-40886

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002814_010 0.0 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
2 Hb_001541_280 0.0935809608 - - phosphate transporter [Manihot esculenta]
3 Hb_004934_130 0.094966254 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
4 Hb_000679_320 0.0992894973 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
5 Hb_020141_030 0.1081370658 - - solanesyl diphosphate synthase, putative [Ricinus communis]
6 Hb_000208_270 0.1103795909 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
7 Hb_000359_160 0.1125061437 - - PREDICTED: protein CAJ1 [Jatropha curcas]
8 Hb_000847_030 0.1211905243 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
9 Hb_002226_090 0.1240921075 - - Stachyose synthase precursor, putative [Ricinus communis]
10 Hb_001775_100 0.1247439441 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
11 Hb_016924_010 0.1251116201 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000007_030 0.1255281077 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_004979_050 0.1256914757 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
14 Hb_003018_150 0.1293811511 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
15 Hb_006915_010 0.1304909056 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
16 Hb_000107_540 0.1307091086 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
17 Hb_000092_060 0.1323223112 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
18 Hb_005063_060 0.1327881723 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
19 Hb_004291_050 0.132955478 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
20 Hb_000723_320 0.1331155266 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]

Gene co-expression network

sample Hb_002814_010 Hb_002814_010 Hb_001541_280 Hb_001541_280 Hb_002814_010--Hb_001541_280 Hb_004934_130 Hb_004934_130 Hb_002814_010--Hb_004934_130 Hb_000679_320 Hb_000679_320 Hb_002814_010--Hb_000679_320 Hb_020141_030 Hb_020141_030 Hb_002814_010--Hb_020141_030 Hb_000208_270 Hb_000208_270 Hb_002814_010--Hb_000208_270 Hb_000359_160 Hb_000359_160 Hb_002814_010--Hb_000359_160 Hb_000270_640 Hb_000270_640 Hb_001541_280--Hb_000270_640 Hb_000847_030 Hb_000847_030 Hb_001541_280--Hb_000847_030 Hb_001541_280--Hb_020141_030 Hb_000140_460 Hb_000140_460 Hb_001541_280--Hb_000140_460 Hb_000002_300 Hb_000002_300 Hb_001541_280--Hb_000002_300 Hb_002713_060 Hb_002713_060 Hb_004934_130--Hb_002713_060 Hb_000920_100 Hb_000920_100 Hb_004934_130--Hb_000920_100 Hb_066293_010 Hb_066293_010 Hb_004934_130--Hb_066293_010 Hb_002226_090 Hb_002226_090 Hb_004934_130--Hb_002226_090 Hb_004934_130--Hb_001541_280 Hb_004979_050 Hb_004979_050 Hb_000679_320--Hb_004979_050 Hb_009393_140 Hb_009393_140 Hb_000679_320--Hb_009393_140 Hb_006472_040 Hb_006472_040 Hb_000679_320--Hb_006472_040 Hb_000679_320--Hb_000359_160 Hb_000107_540 Hb_000107_540 Hb_000679_320--Hb_000107_540 Hb_008112_020 Hb_008112_020 Hb_000679_320--Hb_008112_020 Hb_020141_030--Hb_000208_270 Hb_000787_210 Hb_000787_210 Hb_020141_030--Hb_000787_210 Hb_003018_150 Hb_003018_150 Hb_020141_030--Hb_003018_150 Hb_003058_170 Hb_003058_170 Hb_020141_030--Hb_003058_170 Hb_010098_040 Hb_010098_040 Hb_000208_270--Hb_010098_040 Hb_000208_270--Hb_000787_210 Hb_000538_300 Hb_000538_300 Hb_000208_270--Hb_000538_300 Hb_000966_040 Hb_000966_040 Hb_000208_270--Hb_000966_040 Hb_000359_160--Hb_004979_050 Hb_000359_160--Hb_009393_140 Hb_000723_320 Hb_000723_320 Hb_000359_160--Hb_000723_320 Hb_000359_070 Hb_000359_070 Hb_000359_160--Hb_000359_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.624063 6.70227 14.9211 17.2117 0.828209 1.32333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.346563 0.786003 0.213431 3.39228 58.9682

CAGE analysis