Hb_003058_170

Information

Type -
Description -
Location Contig3058: 158188-162022
Sequence    

Annotation

kegg
ID rcu:RCOM_0218930
description hypothetical protein
nr
ID XP_012065843.1
description PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
swissprot
ID Q8RY82
description F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1
trembl
ID B9T4W6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0218930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32325: 159055-159663 , PASA_asmbl_32326: 158311-162103 , PASA_asmbl_32328: 162189-162411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_170 0.0 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
2 Hb_000076_060 0.0795964348 - - hypothetical protein RCOM_0586940 [Ricinus communis]
3 Hb_003018_150 0.0860654958 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
4 Hb_002713_060 0.0940873611 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
5 Hb_001210_060 0.1024193843 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
6 Hb_000847_030 0.1031113526 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
7 Hb_029223_010 0.1044063634 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
8 Hb_001369_390 0.105173077 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
9 Hb_020141_030 0.1106183478 - - solanesyl diphosphate synthase, putative [Ricinus communis]
10 Hb_001296_060 0.1126137293 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
11 Hb_000116_530 0.1126477563 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 3; Short=HMG-CoA reductase 3 [Hevea brasiliensis]
12 Hb_114917_010 0.1126877054 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
13 Hb_003145_010 0.1139335125 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
14 Hb_002636_070 0.1147449487 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
15 Hb_005569_010 0.1162742766 - - Heme-binding protein, putative [Ricinus communis]
16 Hb_005057_030 0.1164120342 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
17 Hb_004934_130 0.1191130487 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
18 Hb_003195_080 0.1192133178 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
19 Hb_001999_070 0.119987025 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
20 Hb_016924_010 0.1205247377 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003058_170 Hb_003058_170 Hb_000076_060 Hb_000076_060 Hb_003058_170--Hb_000076_060 Hb_003018_150 Hb_003018_150 Hb_003058_170--Hb_003018_150 Hb_002713_060 Hb_002713_060 Hb_003058_170--Hb_002713_060 Hb_001210_060 Hb_001210_060 Hb_003058_170--Hb_001210_060 Hb_000847_030 Hb_000847_030 Hb_003058_170--Hb_000847_030 Hb_029223_010 Hb_029223_010 Hb_003058_170--Hb_029223_010 Hb_005569_010 Hb_005569_010 Hb_000076_060--Hb_005569_010 Hb_001098_040 Hb_001098_040 Hb_000076_060--Hb_001098_040 Hb_000665_210 Hb_000665_210 Hb_000076_060--Hb_000665_210 Hb_000977_020 Hb_000977_020 Hb_000076_060--Hb_000977_020 Hb_009421_070 Hb_009421_070 Hb_000076_060--Hb_009421_070 Hb_003018_150--Hb_000847_030 Hb_005914_160 Hb_005914_160 Hb_003018_150--Hb_005914_160 Hb_003018_150--Hb_001210_060 Hb_020141_030 Hb_020141_030 Hb_003018_150--Hb_020141_030 Hb_000618_110 Hb_000618_110 Hb_003018_150--Hb_000618_110 Hb_005057_030 Hb_005057_030 Hb_002713_060--Hb_005057_030 Hb_173387_010 Hb_173387_010 Hb_002713_060--Hb_173387_010 Hb_010222_060 Hb_010222_060 Hb_002713_060--Hb_010222_060 Hb_002636_070 Hb_002636_070 Hb_002713_060--Hb_002636_070 Hb_000120_480 Hb_000120_480 Hb_002713_060--Hb_000120_480 Hb_009522_020 Hb_009522_020 Hb_002713_060--Hb_009522_020 Hb_001210_060--Hb_000847_030 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_027472_060 Hb_027472_060 Hb_001210_060--Hb_027472_060 Hb_000103_130 Hb_000103_130 Hb_001210_060--Hb_000103_130 Hb_005694_120 Hb_005694_120 Hb_000847_030--Hb_005694_120 Hb_000847_030--Hb_000618_110 Hb_000984_160 Hb_000984_160 Hb_000847_030--Hb_000984_160 Hb_001946_120 Hb_001946_120 Hb_000847_030--Hb_001946_120 Hb_016924_010 Hb_016924_010 Hb_029223_010--Hb_016924_010 Hb_029223_010--Hb_002636_070 Hb_000705_040 Hb_000705_040 Hb_029223_010--Hb_000705_040 Hb_003142_080 Hb_003142_080 Hb_029223_010--Hb_003142_080 Hb_000270_640 Hb_000270_640 Hb_029223_010--Hb_000270_640 Hb_000836_030 Hb_000836_030 Hb_029223_010--Hb_000836_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0325434 5.54677 12.2623 19.2958 0.0435987 0.107595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.23139 0.910178 0.243817 3.72909 33.1703

CAGE analysis