Hb_000665_210

Information

Type -
Description -
Location Contig665: 203317-207081
Sequence    

Annotation

kegg
ID rcu:RCOM_0923310
description calcium lipid binding protein, putative
nr
ID XP_012076512.1
description PREDICTED: synaptotagmin-4 [Jatropha curcas]
swissprot
ID A0JJX5
description Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1
trembl
ID A0A067KEY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07139 PE=4 SV=1
Gene Ontology
ID GO:0009887
description calcium lipid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_210 0.0 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
2 Hb_009421_070 0.0598198097 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
3 Hb_000784_060 0.0638942136 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001098_040 0.0922394309 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
5 Hb_000076_060 0.0922908513 - - hypothetical protein RCOM_0586940 [Ricinus communis]
6 Hb_000424_140 0.0930100211 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
7 Hb_000977_020 0.0956844192 - - beta-hexosaminidase, putative [Ricinus communis]
8 Hb_004466_090 0.1005487238 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000017_140 0.1038674613 - - polygalacturonase, putative [Ricinus communis]
10 Hb_000670_070 0.1055849634 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
11 Hb_000836_030 0.106068014 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
12 Hb_010264_010 0.1064187574 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
13 Hb_000608_190 0.1085768883 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
14 Hb_001369_390 0.1088782684 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
15 Hb_005569_010 0.1104571019 - - Heme-binding protein, putative [Ricinus communis]
16 Hb_089124_010 0.1110192981 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
17 Hb_005842_010 0.1111622647 - - nitrate transporter, putative [Ricinus communis]
18 Hb_016277_030 0.1121752337 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
19 Hb_029223_010 0.1139585551 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
20 Hb_003195_080 0.1142234794 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000665_210 Hb_000665_210 Hb_009421_070 Hb_009421_070 Hb_000665_210--Hb_009421_070 Hb_000784_060 Hb_000784_060 Hb_000665_210--Hb_000784_060 Hb_001098_040 Hb_001098_040 Hb_000665_210--Hb_001098_040 Hb_000076_060 Hb_000076_060 Hb_000665_210--Hb_000076_060 Hb_000424_140 Hb_000424_140 Hb_000665_210--Hb_000424_140 Hb_000977_020 Hb_000977_020 Hb_000665_210--Hb_000977_020 Hb_001206_100 Hb_001206_100 Hb_009421_070--Hb_001206_100 Hb_009421_070--Hb_001098_040 Hb_009421_070--Hb_000784_060 Hb_005842_010 Hb_005842_010 Hb_009421_070--Hb_005842_010 Hb_004032_190 Hb_004032_190 Hb_009421_070--Hb_004032_190 Hb_004466_090 Hb_004466_090 Hb_000784_060--Hb_004466_090 Hb_001369_390 Hb_001369_390 Hb_000784_060--Hb_001369_390 Hb_004374_030 Hb_004374_030 Hb_000784_060--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_000784_060--Hb_016277_030 Hb_002942_200 Hb_002942_200 Hb_001098_040--Hb_002942_200 Hb_000329_440 Hb_000329_440 Hb_001098_040--Hb_000329_440 Hb_060253_010 Hb_060253_010 Hb_001098_040--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_001098_040--Hb_000627_050 Hb_001098_040--Hb_000977_020 Hb_003058_170 Hb_003058_170 Hb_000076_060--Hb_003058_170 Hb_005569_010 Hb_005569_010 Hb_000076_060--Hb_005569_010 Hb_000076_060--Hb_001098_040 Hb_000076_060--Hb_000977_020 Hb_000076_060--Hb_009421_070 Hb_000424_140--Hb_005569_010 Hb_000670_070 Hb_000670_070 Hb_000424_140--Hb_000670_070 Hb_000424_140--Hb_005842_010 Hb_000958_090 Hb_000958_090 Hb_000424_140--Hb_000958_090 Hb_000608_190 Hb_000608_190 Hb_000424_140--Hb_000608_190 Hb_000424_140--Hb_009421_070 Hb_002724_010 Hb_002724_010 Hb_000977_020--Hb_002724_010 Hb_000977_020--Hb_000627_050 Hb_000212_410 Hb_000212_410 Hb_000977_020--Hb_000212_410 Hb_000977_020--Hb_009421_070 Hb_000703_120 Hb_000703_120 Hb_000977_020--Hb_000703_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00962379 0.0350775 0.0609104 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0166094 0.0876935

CAGE analysis