Hb_000076_060

Information

Type -
Description -
Location Contig76: 47410-47910
Sequence    

Annotation

kegg
ID rcu:RCOM_0586940
description hypothetical protein
nr
ID XP_002522995.1
description hypothetical protein RCOM_0586940 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAH6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0586940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 039_P21r.ab1: 47272-48011

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_060 0.0 - - hypothetical protein RCOM_0586940 [Ricinus communis]
2 Hb_003058_170 0.0795964348 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
3 Hb_005569_010 0.0825442943 - - Heme-binding protein, putative [Ricinus communis]
4 Hb_001098_040 0.0862950771 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
5 Hb_000665_210 0.0922908513 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
6 Hb_000977_020 0.0928390997 - - beta-hexosaminidase, putative [Ricinus communis]
7 Hb_009421_070 0.0932309521 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
8 Hb_000424_140 0.093686521 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
9 Hb_000984_160 0.0942022158 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
10 Hb_000627_050 0.0986013446 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
11 Hb_131876_010 0.0991567657 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
12 Hb_069696_020 0.0993609056 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
13 Hb_001210_060 0.101447942 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
14 Hb_004835_020 0.1030548893 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
15 Hb_000329_440 0.1055513237 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
16 Hb_001248_070 0.1073492457 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
17 Hb_001296_060 0.1103102209 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
18 Hb_000847_030 0.11066039 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
19 Hb_003195_080 0.111838607 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
20 Hb_001369_390 0.1131224876 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000076_060 Hb_000076_060 Hb_003058_170 Hb_003058_170 Hb_000076_060--Hb_003058_170 Hb_005569_010 Hb_005569_010 Hb_000076_060--Hb_005569_010 Hb_001098_040 Hb_001098_040 Hb_000076_060--Hb_001098_040 Hb_000665_210 Hb_000665_210 Hb_000076_060--Hb_000665_210 Hb_000977_020 Hb_000977_020 Hb_000076_060--Hb_000977_020 Hb_009421_070 Hb_009421_070 Hb_000076_060--Hb_009421_070 Hb_003018_150 Hb_003018_150 Hb_003058_170--Hb_003018_150 Hb_002713_060 Hb_002713_060 Hb_003058_170--Hb_002713_060 Hb_001210_060 Hb_001210_060 Hb_003058_170--Hb_001210_060 Hb_000847_030 Hb_000847_030 Hb_003058_170--Hb_000847_030 Hb_029223_010 Hb_029223_010 Hb_003058_170--Hb_029223_010 Hb_004835_020 Hb_004835_020 Hb_005569_010--Hb_004835_020 Hb_000984_160 Hb_000984_160 Hb_005569_010--Hb_000984_160 Hb_000424_140 Hb_000424_140 Hb_005569_010--Hb_000424_140 Hb_003195_080 Hb_003195_080 Hb_005569_010--Hb_003195_080 Hb_000329_440 Hb_000329_440 Hb_005569_010--Hb_000329_440 Hb_000958_090 Hb_000958_090 Hb_005569_010--Hb_000958_090 Hb_002942_200 Hb_002942_200 Hb_001098_040--Hb_002942_200 Hb_001098_040--Hb_000329_440 Hb_001098_040--Hb_009421_070 Hb_060253_010 Hb_060253_010 Hb_001098_040--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_001098_040--Hb_000627_050 Hb_001098_040--Hb_000977_020 Hb_000665_210--Hb_009421_070 Hb_000784_060 Hb_000784_060 Hb_000665_210--Hb_000784_060 Hb_000665_210--Hb_001098_040 Hb_000665_210--Hb_000424_140 Hb_000665_210--Hb_000977_020 Hb_002724_010 Hb_002724_010 Hb_000977_020--Hb_002724_010 Hb_000977_020--Hb_000627_050 Hb_000212_410 Hb_000212_410 Hb_000977_020--Hb_000212_410 Hb_000977_020--Hb_009421_070 Hb_000703_120 Hb_000703_120 Hb_000977_020--Hb_000703_120 Hb_001206_100 Hb_001206_100 Hb_009421_070--Hb_001206_100 Hb_009421_070--Hb_000784_060 Hb_005842_010 Hb_005842_010 Hb_009421_070--Hb_005842_010 Hb_004032_190 Hb_004032_190 Hb_009421_070--Hb_004032_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.43867 9.19756 12.2464 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133774 0.315284 0 2.40247 19.0662

CAGE analysis