Hb_002724_010

Information

Type -
Description -
Location Contig2724: 1529-8605
Sequence    

Annotation

kegg
ID cit:102629417
description nucleobase-ascorbate transporter 4-like
nr
ID XP_006486910.1
description PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
swissprot
ID P93039
description Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2
trembl
ID V4U9U2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028183mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28482: 4806-6337 , PASA_asmbl_28483: 7588-8501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002724_010 0.0 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
2 Hb_000977_020 0.0607745595 - - beta-hexosaminidase, putative [Ricinus communis]
3 Hb_000703_120 0.0676956621 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
4 Hb_000212_410 0.0700567253 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
5 Hb_000318_010 0.076859438 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
6 Hb_000627_050 0.0769597634 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
7 Hb_000290_030 0.0836415364 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
8 Hb_009788_020 0.0842005762 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
9 Hb_000977_030 0.0920234343 - - unnamed protein product [Vitis vinifera]
10 Hb_007270_020 0.0934239343 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
11 Hb_003580_050 0.0957444974 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
12 Hb_002890_200 0.0970916115 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
13 Hb_001417_060 0.0972594088 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
14 Hb_004696_010 0.0974590072 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
15 Hb_002942_200 0.0978548822 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
16 Hb_000162_200 0.099729233 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
17 Hb_001098_040 0.1002376601 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
18 Hb_029639_030 0.1062176038 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
19 Hb_097335_010 0.106635975 - - abhydrolase domain containing, putative [Ricinus communis]
20 Hb_003145_010 0.1095963152 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]

Gene co-expression network

sample Hb_002724_010 Hb_002724_010 Hb_000977_020 Hb_000977_020 Hb_002724_010--Hb_000977_020 Hb_000703_120 Hb_000703_120 Hb_002724_010--Hb_000703_120 Hb_000212_410 Hb_000212_410 Hb_002724_010--Hb_000212_410 Hb_000318_010 Hb_000318_010 Hb_002724_010--Hb_000318_010 Hb_000627_050 Hb_000627_050 Hb_002724_010--Hb_000627_050 Hb_000290_030 Hb_000290_030 Hb_002724_010--Hb_000290_030 Hb_000977_020--Hb_000627_050 Hb_000977_020--Hb_000212_410 Hb_001098_040 Hb_001098_040 Hb_000977_020--Hb_001098_040 Hb_009421_070 Hb_009421_070 Hb_000977_020--Hb_009421_070 Hb_000977_020--Hb_000703_120 Hb_000703_120--Hb_000627_050 Hb_009788_020 Hb_009788_020 Hb_000703_120--Hb_009788_020 Hb_000703_120--Hb_000212_410 Hb_002890_200 Hb_002890_200 Hb_000703_120--Hb_002890_200 Hb_007270_020 Hb_007270_020 Hb_000703_120--Hb_007270_020 Hb_000212_410--Hb_000627_050 Hb_000212_410--Hb_009788_020 Hb_000212_410--Hb_007270_020 Hb_060253_010 Hb_060253_010 Hb_000212_410--Hb_060253_010 Hb_000162_200 Hb_000162_200 Hb_000318_010--Hb_000162_200 Hb_000318_010--Hb_000703_120 Hb_001417_060 Hb_001417_060 Hb_000318_010--Hb_001417_060 Hb_000318_010--Hb_000977_020 Hb_000977_030 Hb_000977_030 Hb_000318_010--Hb_000977_030 Hb_000627_050--Hb_009788_020 Hb_000627_050--Hb_007270_020 Hb_069696_020 Hb_069696_020 Hb_000627_050--Hb_069696_020 Hb_010557_020 Hb_010557_020 Hb_000290_030--Hb_010557_020 Hb_000290_030--Hb_000977_030 Hb_000856_200 Hb_000856_200 Hb_000290_030--Hb_000856_200 Hb_000160_250 Hb_000160_250 Hb_000290_030--Hb_000160_250 Hb_000473_100 Hb_000473_100 Hb_000290_030--Hb_000473_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177955 5.40202 22.9279 28.4038 0.0861101 0.112154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0601634 0.0473401 0.300052 7.17516 30.3707

CAGE analysis