Hb_007270_020

Information

Type -
Description -
Location Contig7270: 28056-29880
Sequence    

Annotation

kegg
ID rcu:RCOM_0850520
description Alpha-L-fucosidase 2 precursor, putative
nr
ID KDP45344.1
description hypothetical protein JCGZ_09593 [Jatropha curcas]
swissprot
ID Q9LII9
description GDSL esterase/lipase At3g27950 OS=Arabidopsis thaliana GN=At3g27950 PE=2 SV=1
trembl
ID A0A067LLS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09593 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at3g27950-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55872: 28185-28885 , PASA_asmbl_55873: 28890-29981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007270_020 0.0 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
2 Hb_000212_410 0.053388437 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
3 Hb_009788_020 0.0635756059 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
4 Hb_060253_010 0.0642997064 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
5 Hb_000627_050 0.0706022492 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
6 Hb_000703_120 0.0775518864 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
7 Hb_003873_020 0.0777742064 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
8 Hb_009393_090 0.0790548208 - - acyltransferase, putative [Ricinus communis]
9 Hb_005365_010 0.0808656329 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
10 Hb_000718_060 0.0828161938 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
11 Hb_003435_030 0.0841805515 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
12 Hb_002942_200 0.084326811 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
13 Hb_001098_040 0.0848592097 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
14 Hb_001750_020 0.0902246266 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
15 Hb_039075_020 0.092067891 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
16 Hb_002724_010 0.0934239343 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
17 Hb_008221_200 0.0934459109 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
18 Hb_000977_020 0.0967655762 - - beta-hexosaminidase, putative [Ricinus communis]
19 Hb_000046_120 0.0977161512 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
20 Hb_001100_070 0.1002643594 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007270_020 Hb_007270_020 Hb_000212_410 Hb_000212_410 Hb_007270_020--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_007270_020--Hb_009788_020 Hb_060253_010 Hb_060253_010 Hb_007270_020--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_007270_020--Hb_000627_050 Hb_000703_120 Hb_000703_120 Hb_007270_020--Hb_000703_120 Hb_003873_020 Hb_003873_020 Hb_007270_020--Hb_003873_020 Hb_000212_410--Hb_000627_050 Hb_000212_410--Hb_009788_020 Hb_000212_410--Hb_000703_120 Hb_002724_010 Hb_002724_010 Hb_000212_410--Hb_002724_010 Hb_000212_410--Hb_060253_010 Hb_009788_020--Hb_000703_120 Hb_009788_020--Hb_000627_050 Hb_009788_020--Hb_060253_010 Hb_001488_420 Hb_001488_420 Hb_009788_020--Hb_001488_420 Hb_003435_030 Hb_003435_030 Hb_060253_010--Hb_003435_030 Hb_000520_040 Hb_000520_040 Hb_060253_010--Hb_000520_040 Hb_000046_120 Hb_000046_120 Hb_060253_010--Hb_000046_120 Hb_000627_050--Hb_000703_120 Hb_069696_020 Hb_069696_020 Hb_000627_050--Hb_069696_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020 Hb_002890_200 Hb_002890_200 Hb_000703_120--Hb_002890_200 Hb_000703_120--Hb_002724_010 Hb_000718_060 Hb_000718_060 Hb_003873_020--Hb_000718_060 Hb_009393_090 Hb_009393_090 Hb_003873_020--Hb_009393_090 Hb_001750_020 Hb_001750_020 Hb_003873_020--Hb_001750_020 Hb_039075_020 Hb_039075_020 Hb_003873_020--Hb_039075_020 Hb_003873_020--Hb_003435_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0141497 6.04621 23.0306 22.6344 0.0557869 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0644873 0 0 3.50472 24.8596

CAGE analysis