Hb_001750_020

Information

Type -
Description -
Location Contig1750: 17982-21604
Sequence    

Annotation

kegg
ID pop:POPTR_0006s18630g
description hypothetical protein
nr
ID XP_012065295.1
description PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
swissprot
ID Q8RWF5
description MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1
trembl
ID A0A067LHX7
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_23022 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16754: 17950-21580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001750_020 0.0 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
2 Hb_000046_120 0.0806230744 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
3 Hb_003873_020 0.0826541581 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
4 Hb_003435_030 0.0839122428 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
5 Hb_060253_010 0.0879265525 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
6 Hb_007270_020 0.0902246266 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
7 Hb_002702_010 0.0909420586 - - carbohydrate binding protein, putative [Ricinus communis]
8 Hb_000212_410 0.0935209601 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
9 Hb_001942_010 0.0956027447 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
10 Hb_000156_110 0.0998458147 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
11 Hb_084303_010 0.1031471476 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011472_030 0.1036159837 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
13 Hb_000718_060 0.1037779226 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
14 Hb_012395_090 0.1053083335 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
15 Hb_029695_090 0.1054725765 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
16 Hb_001148_110 0.1072568192 - - -
17 Hb_002835_310 0.1072570097 - - ATP binding protein, putative [Ricinus communis]
18 Hb_010136_010 0.1074778483 - - Putative receptor-like protein kinase [Glycine soja]
19 Hb_000020_090 0.1076537654 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
20 Hb_002066_110 0.1080721929 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001750_020 Hb_001750_020 Hb_000046_120 Hb_000046_120 Hb_001750_020--Hb_000046_120 Hb_003873_020 Hb_003873_020 Hb_001750_020--Hb_003873_020 Hb_003435_030 Hb_003435_030 Hb_001750_020--Hb_003435_030 Hb_060253_010 Hb_060253_010 Hb_001750_020--Hb_060253_010 Hb_007270_020 Hb_007270_020 Hb_001750_020--Hb_007270_020 Hb_002702_010 Hb_002702_010 Hb_001750_020--Hb_002702_010 Hb_000046_120--Hb_003435_030 Hb_001942_010 Hb_001942_010 Hb_000046_120--Hb_001942_010 Hb_018591_020 Hb_018591_020 Hb_000046_120--Hb_018591_020 Hb_000002_500 Hb_000002_500 Hb_000046_120--Hb_000002_500 Hb_000046_120--Hb_060253_010 Hb_012395_090 Hb_012395_090 Hb_000046_120--Hb_012395_090 Hb_003873_020--Hb_007270_020 Hb_000718_060 Hb_000718_060 Hb_003873_020--Hb_000718_060 Hb_009393_090 Hb_009393_090 Hb_003873_020--Hb_009393_090 Hb_039075_020 Hb_039075_020 Hb_003873_020--Hb_039075_020 Hb_003873_020--Hb_003435_030 Hb_003435_030--Hb_060253_010 Hb_010136_010 Hb_010136_010 Hb_003435_030--Hb_010136_010 Hb_003435_030--Hb_001942_010 Hb_003435_030--Hb_018591_020 Hb_003435_030--Hb_002702_010 Hb_060253_010--Hb_007270_020 Hb_000520_040 Hb_000520_040 Hb_060253_010--Hb_000520_040 Hb_000212_410 Hb_000212_410 Hb_060253_010--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_060253_010--Hb_009788_020 Hb_007270_020--Hb_000212_410 Hb_007270_020--Hb_009788_020 Hb_000627_050 Hb_000627_050 Hb_007270_020--Hb_000627_050 Hb_000703_120 Hb_000703_120 Hb_007270_020--Hb_000703_120 Hb_002702_010--Hb_012395_090 Hb_011013_040 Hb_011013_040 Hb_002702_010--Hb_011013_040 Hb_004223_150 Hb_004223_150 Hb_002702_010--Hb_004223_150 Hb_002702_010--Hb_000046_120 Hb_002702_010--Hb_001942_010 Hb_003371_080 Hb_003371_080 Hb_002702_010--Hb_003371_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.79979 4.12997 3.29354 0 0.0824111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.031229 0 0 0.284399 3.90633

CAGE analysis