Hb_000718_060

Information

Type transcription factor
Description TF Family: MYB
Location Contig718: 133641-135244
Sequence    

Annotation

kegg
ID rcu:RCOM_1617720
description DNA binding protein, putative
nr
ID XP_002511974.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID B9RE35
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1617720 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor divaricata

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55510: 133754-135221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000718_060 0.0 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
2 Hb_009393_090 0.0463082672 - - acyltransferase, putative [Ricinus communis]
3 Hb_008221_200 0.0560095477 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
4 Hb_001100_070 0.0796501116 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_003873_020 0.0805048234 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
6 Hb_002066_110 0.0821679675 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
7 Hb_007270_020 0.0828161938 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
8 Hb_008054_030 0.0836258633 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
9 Hb_000617_330 0.0867710011 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
10 Hb_005694_160 0.0874456475 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003339_010 0.0874528554 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
12 Hb_011909_050 0.0882929468 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
13 Hb_039075_020 0.0943884723 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
14 Hb_001289_010 0.0954443181 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
15 Hb_002942_200 0.0954654835 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
16 Hb_001117_050 0.0957567526 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
17 Hb_007163_100 0.0961174884 - - BnaC03g52280D [Brassica napus]
18 Hb_001032_020 0.097283735 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_012098_160 0.0977272597 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
20 Hb_001794_040 0.0983625235 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000718_060 Hb_000718_060 Hb_009393_090 Hb_009393_090 Hb_000718_060--Hb_009393_090 Hb_008221_200 Hb_008221_200 Hb_000718_060--Hb_008221_200 Hb_001100_070 Hb_001100_070 Hb_000718_060--Hb_001100_070 Hb_003873_020 Hb_003873_020 Hb_000718_060--Hb_003873_020 Hb_002066_110 Hb_002066_110 Hb_000718_060--Hb_002066_110 Hb_007270_020 Hb_007270_020 Hb_000718_060--Hb_007270_020 Hb_000818_090 Hb_000818_090 Hb_009393_090--Hb_000818_090 Hb_009393_090--Hb_001100_070 Hb_009393_090--Hb_008221_200 Hb_011909_050 Hb_011909_050 Hb_009393_090--Hb_011909_050 Hb_009393_090--Hb_007270_020 Hb_002942_200 Hb_002942_200 Hb_008221_200--Hb_002942_200 Hb_008054_030 Hb_008054_030 Hb_008221_200--Hb_008054_030 Hb_001117_050 Hb_001117_050 Hb_008221_200--Hb_001117_050 Hb_003339_010 Hb_003339_010 Hb_008221_200--Hb_003339_010 Hb_001289_010 Hb_001289_010 Hb_001100_070--Hb_001289_010 Hb_001100_070--Hb_000818_090 Hb_000617_330 Hb_000617_330 Hb_001100_070--Hb_000617_330 Hb_001100_070--Hb_007270_020 Hb_003873_020--Hb_007270_020 Hb_003873_020--Hb_009393_090 Hb_001750_020 Hb_001750_020 Hb_003873_020--Hb_001750_020 Hb_039075_020 Hb_039075_020 Hb_003873_020--Hb_039075_020 Hb_003435_030 Hb_003435_030 Hb_003873_020--Hb_003435_030 Hb_002150_090 Hb_002150_090 Hb_002066_110--Hb_002150_090 Hb_001674_010 Hb_001674_010 Hb_002066_110--Hb_001674_010 Hb_001095_020 Hb_001095_020 Hb_002066_110--Hb_001095_020 Hb_002066_110--Hb_008054_030 Hb_002066_110--Hb_003339_010 Hb_000617_360 Hb_000617_360 Hb_002066_110--Hb_000617_360 Hb_000212_410 Hb_000212_410 Hb_007270_020--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_007270_020--Hb_009788_020 Hb_060253_010 Hb_060253_010 Hb_007270_020--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_007270_020--Hb_000627_050 Hb_000703_120 Hb_000703_120 Hb_007270_020--Hb_000703_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10809 18.1686 58.5754 73.5259 0.0600585 0.192373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0353227 0.222301 0 4.61026 60.866

CAGE analysis