Hb_009393_090

Information

Type -
Description -
Location Contig9393: 53120-55785
Sequence    

Annotation

kegg
ID rcu:RCOM_0708020
description acyltransferase, putative
nr
ID XP_002516167.1
description acyltransferase, putative [Ricinus communis]
swissprot
ID Q570B4
description 3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2
trembl
ID B9RQZ8
description 3-ketoacyl-CoA synthase OS=Ricinus communis GN=RCOM_0708020 PE=3 SV=1
Gene Ontology
ID GO:0005783
description 3-ketoacyl- synthase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63054: 53118-55839
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_090 0.0 - - acyltransferase, putative [Ricinus communis]
2 Hb_000718_060 0.0463082672 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
3 Hb_000818_090 0.0683884762 - - glutamate receptor 3 plant, putative [Ricinus communis]
4 Hb_001100_070 0.0697302749 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_008221_200 0.0723083205 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
6 Hb_011909_050 0.0771909023 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
7 Hb_007270_020 0.0790548208 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
8 Hb_003873_020 0.0806291021 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
9 Hb_039075_020 0.0826786992 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
10 Hb_013394_120 0.0839502029 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
11 Hb_001289_010 0.086975249 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
12 Hb_002942_200 0.0889642025 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
13 Hb_005365_010 0.0919235592 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
14 Hb_001789_120 0.0931285928 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
15 Hb_000617_330 0.0961832651 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
16 Hb_003435_030 0.1012450737 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
17 Hb_005694_160 0.1065187032 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001098_040 0.109063389 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
19 Hb_060253_010 0.1101048989 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
20 Hb_000160_250 0.1111988776 - - Uncharacterized protein TCM_019235 [Theobroma cacao]

Gene co-expression network

sample Hb_009393_090 Hb_009393_090 Hb_000718_060 Hb_000718_060 Hb_009393_090--Hb_000718_060 Hb_000818_090 Hb_000818_090 Hb_009393_090--Hb_000818_090 Hb_001100_070 Hb_001100_070 Hb_009393_090--Hb_001100_070 Hb_008221_200 Hb_008221_200 Hb_009393_090--Hb_008221_200 Hb_011909_050 Hb_011909_050 Hb_009393_090--Hb_011909_050 Hb_007270_020 Hb_007270_020 Hb_009393_090--Hb_007270_020 Hb_000718_060--Hb_008221_200 Hb_000718_060--Hb_001100_070 Hb_003873_020 Hb_003873_020 Hb_000718_060--Hb_003873_020 Hb_002066_110 Hb_002066_110 Hb_000718_060--Hb_002066_110 Hb_000718_060--Hb_007270_020 Hb_001789_120 Hb_001789_120 Hb_000818_090--Hb_001789_120 Hb_013394_120 Hb_013394_120 Hb_000818_090--Hb_013394_120 Hb_004880_050 Hb_004880_050 Hb_000818_090--Hb_004880_050 Hb_005365_010 Hb_005365_010 Hb_000818_090--Hb_005365_010 Hb_000818_090--Hb_001100_070 Hb_001289_010 Hb_001289_010 Hb_001100_070--Hb_001289_010 Hb_000617_330 Hb_000617_330 Hb_001100_070--Hb_000617_330 Hb_001100_070--Hb_007270_020 Hb_002942_200 Hb_002942_200 Hb_008221_200--Hb_002942_200 Hb_008054_030 Hb_008054_030 Hb_008221_200--Hb_008054_030 Hb_001117_050 Hb_001117_050 Hb_008221_200--Hb_001117_050 Hb_003339_010 Hb_003339_010 Hb_008221_200--Hb_003339_010 Hb_011909_050--Hb_000718_060 Hb_161103_010 Hb_161103_010 Hb_011909_050--Hb_161103_010 Hb_006651_030 Hb_006651_030 Hb_011909_050--Hb_006651_030 Hb_008406_060 Hb_008406_060 Hb_011909_050--Hb_008406_060 Hb_001766_130 Hb_001766_130 Hb_011909_050--Hb_001766_130 Hb_000212_410 Hb_000212_410 Hb_007270_020--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_007270_020--Hb_009788_020 Hb_060253_010 Hb_060253_010 Hb_007270_020--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_007270_020--Hb_000627_050 Hb_000703_120 Hb_000703_120 Hb_007270_020--Hb_000703_120 Hb_007270_020--Hb_003873_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0227098 10.5929 25.208 30.0875 0.00949007 0.0186433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0230412 0.0543881 0 2.36618 27.7622

CAGE analysis