Hb_161103_010

Information

Type -
Description -
Location Contig161103: 482-850
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161103_010 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_008406_060 0.0619753516 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
3 Hb_011909_050 0.0900756361 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
4 Hb_006651_030 0.0959798136 - - unnamed protein product [Homo sapiens]
5 Hb_001477_060 0.1006202003 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
6 Hb_007357_010 0.1074293283 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000928_280 0.1168368796 - - hypothetical protein VITISV_005300 [Vitis vinifera]
8 Hb_000193_180 0.1177889697 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
9 Hb_005675_070 0.1183978663 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
10 Hb_008895_020 0.1213137934 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
11 Hb_001221_070 0.1264339425 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
12 Hb_001766_130 0.127038113 - - zinc finger protein, putative [Ricinus communis]
13 Hb_029977_030 0.1277081323 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
14 Hb_054926_010 0.1322445159 - - glutamate receptor 2 plant, putative [Ricinus communis]
15 Hb_003893_130 0.1329616263 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_000116_160 0.1336152322 transcription factor TF Family: RWP-RK hypothetical protein JCGZ_22391 [Jatropha curcas]
17 Hb_005211_210 0.135329691 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
18 Hb_007632_230 0.1367955457 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
19 Hb_009393_090 0.1369937974 - - acyltransferase, putative [Ricinus communis]
20 Hb_124677_090 0.1370614568 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_161103_010 Hb_161103_010 Hb_008406_060 Hb_008406_060 Hb_161103_010--Hb_008406_060 Hb_011909_050 Hb_011909_050 Hb_161103_010--Hb_011909_050 Hb_006651_030 Hb_006651_030 Hb_161103_010--Hb_006651_030 Hb_001477_060 Hb_001477_060 Hb_161103_010--Hb_001477_060 Hb_007357_010 Hb_007357_010 Hb_161103_010--Hb_007357_010 Hb_000928_280 Hb_000928_280 Hb_161103_010--Hb_000928_280 Hb_000116_160 Hb_000116_160 Hb_008406_060--Hb_000116_160 Hb_008406_060--Hb_011909_050 Hb_008406_060--Hb_006651_030 Hb_008019_010 Hb_008019_010 Hb_008406_060--Hb_008019_010 Hb_018134_010 Hb_018134_010 Hb_008406_060--Hb_018134_010 Hb_009393_090 Hb_009393_090 Hb_011909_050--Hb_009393_090 Hb_000718_060 Hb_000718_060 Hb_011909_050--Hb_000718_060 Hb_011909_050--Hb_006651_030 Hb_001766_130 Hb_001766_130 Hb_011909_050--Hb_001766_130 Hb_029977_030 Hb_029977_030 Hb_006651_030--Hb_029977_030 Hb_008895_020 Hb_008895_020 Hb_006651_030--Hb_008895_020 Hb_006651_030--Hb_001766_130 Hb_124677_090 Hb_124677_090 Hb_001477_060--Hb_124677_090 Hb_009222_040 Hb_009222_040 Hb_001477_060--Hb_009222_040 Hb_001477_060--Hb_007357_010 Hb_001638_340 Hb_001638_340 Hb_001477_060--Hb_001638_340 Hb_001477_060--Hb_008895_020 Hb_001277_370 Hb_001277_370 Hb_007357_010--Hb_001277_370 Hb_007357_010--Hb_124677_090 Hb_001715_060 Hb_001715_060 Hb_007357_010--Hb_001715_060 Hb_007632_230 Hb_007632_230 Hb_007357_010--Hb_007632_230 Hb_001221_070 Hb_001221_070 Hb_007357_010--Hb_001221_070 Hb_000710_030 Hb_000710_030 Hb_000928_280--Hb_000710_030 Hb_000928_280--Hb_008895_020 Hb_000928_280--Hb_008406_060 Hb_000928_280--Hb_006651_030 Hb_000928_280--Hb_001477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.212086 0.312545 0.39571 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.313571

CAGE analysis