Hb_000928_280

Information

Type -
Description -
Location Contig928: 244382-245095
Sequence    

Annotation

kegg
ID cit:102620768
description glutathione transferase GST 23-like
nr
ID CAN65425.1
description hypothetical protein VITISV_005300 [Vitis vinifera]
swissprot
ID P32111
description Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1
trembl
ID A5BAG0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005300 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62785: 244537-244844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_280 0.0 - - hypothetical protein VITISV_005300 [Vitis vinifera]
2 Hb_000710_030 0.1107062438 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
3 Hb_161103_010 0.1168368796 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_008895_020 0.1179484886 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
5 Hb_008406_060 0.1302249827 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
6 Hb_006651_030 0.1346001728 - - unnamed protein product [Homo sapiens]
7 Hb_001477_060 0.1351514154 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
8 Hb_000193_180 0.1361926631 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
9 Hb_011909_050 0.1369732333 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
10 Hb_000185_130 0.1421312375 - - UBX domain-containing protein 8-B, putative [Ricinus communis]
11 Hb_124677_090 0.1450259486 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003893_130 0.1452211881 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_000749_290 0.1519384746 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
14 Hb_029977_030 0.1541350558 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
15 Hb_001766_130 0.1550364885 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000588_050 0.1560378027 transcription factor TF Family: Trihelix hypothetical protein POPTR_0008s02580g [Populus trichocarpa]
17 Hb_001289_010 0.1561062334 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
18 Hb_007357_010 0.1573161126 - - cytochrome P450, putative [Ricinus communis]
19 Hb_039946_060 0.1590881043 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
20 Hb_000413_050 0.1602643648 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000928_280 Hb_000928_280 Hb_000710_030 Hb_000710_030 Hb_000928_280--Hb_000710_030 Hb_161103_010 Hb_161103_010 Hb_000928_280--Hb_161103_010 Hb_008895_020 Hb_008895_020 Hb_000928_280--Hb_008895_020 Hb_008406_060 Hb_008406_060 Hb_000928_280--Hb_008406_060 Hb_006651_030 Hb_006651_030 Hb_000928_280--Hb_006651_030 Hb_001477_060 Hb_001477_060 Hb_000928_280--Hb_001477_060 Hb_001766_130 Hb_001766_130 Hb_000710_030--Hb_001766_130 Hb_003893_130 Hb_003893_130 Hb_000710_030--Hb_003893_130 Hb_012098_160 Hb_012098_160 Hb_000710_030--Hb_012098_160 Hb_011909_050 Hb_011909_050 Hb_000710_030--Hb_011909_050 Hb_000710_030--Hb_008895_020 Hb_161103_010--Hb_008406_060 Hb_161103_010--Hb_011909_050 Hb_161103_010--Hb_006651_030 Hb_161103_010--Hb_001477_060 Hb_007357_010 Hb_007357_010 Hb_161103_010--Hb_007357_010 Hb_001638_340 Hb_001638_340 Hb_008895_020--Hb_001638_340 Hb_008895_020--Hb_006651_030 Hb_029977_030 Hb_029977_030 Hb_008895_020--Hb_029977_030 Hb_124677_090 Hb_124677_090 Hb_008895_020--Hb_124677_090 Hb_008895_020--Hb_001477_060 Hb_059275_010 Hb_059275_010 Hb_008895_020--Hb_059275_010 Hb_000116_160 Hb_000116_160 Hb_008406_060--Hb_000116_160 Hb_008406_060--Hb_011909_050 Hb_008406_060--Hb_006651_030 Hb_008019_010 Hb_008019_010 Hb_008406_060--Hb_008019_010 Hb_018134_010 Hb_018134_010 Hb_008406_060--Hb_018134_010 Hb_006651_030--Hb_029977_030 Hb_006651_030--Hb_011909_050 Hb_006651_030--Hb_001766_130 Hb_001477_060--Hb_124677_090 Hb_009222_040 Hb_009222_040 Hb_001477_060--Hb_009222_040 Hb_001477_060--Hb_007357_010 Hb_001477_060--Hb_001638_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.302245 3.11499 5.46874 6.8572 0 0.0638964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10023 0.0787728 0 0 5.18723

CAGE analysis