Hb_008406_060

Information

Type -
Description -
Location Contig8406: 55873-56250
Sequence    

Annotation

kegg
ID mtr:MTR_3g046530
description Non-specific lipid-transfer protein
nr
ID XP_012088239.1
description PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
swissprot
ID Q2QYL3
description Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1
trembl
ID G7IXE1
description Lipid transfer protein OS=Medicago truncatula GN=MTR_3g046530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_060 0.0 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
2 Hb_161103_010 0.0619753516 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_000116_160 0.0809355872 transcription factor TF Family: RWP-RK hypothetical protein JCGZ_22391 [Jatropha curcas]
4 Hb_011909_050 0.0922050842 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
5 Hb_006651_030 0.0940747084 - - unnamed protein product [Homo sapiens]
6 Hb_008019_010 0.1067866135 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
7 Hb_018134_010 0.1091061604 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
8 Hb_001221_070 0.1118829641 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
9 Hb_054926_010 0.1158690915 - - glutamate receptor 2 plant, putative [Ricinus communis]
10 Hb_007357_010 0.1184035012 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000413_050 0.1237839025 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
12 Hb_007632_230 0.1245366638 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
13 Hb_005890_010 0.1267665147 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
14 Hb_008895_020 0.1285024819 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
15 Hb_000928_280 0.1302249827 - - hypothetical protein VITISV_005300 [Vitis vinifera]
16 Hb_001477_060 0.1327851706 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
17 Hb_004553_040 0.1342828379 - - PREDICTED: protein YLS9-like [Jatropha curcas]
18 Hb_001677_170 0.136367931 - - hypothetical protein M569_03661, partial [Genlisea aurea]
19 Hb_029977_030 0.1364166589 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
20 Hb_127629_010 0.1377417057 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]

Gene co-expression network

sample Hb_008406_060 Hb_008406_060 Hb_161103_010 Hb_161103_010 Hb_008406_060--Hb_161103_010 Hb_000116_160 Hb_000116_160 Hb_008406_060--Hb_000116_160 Hb_011909_050 Hb_011909_050 Hb_008406_060--Hb_011909_050 Hb_006651_030 Hb_006651_030 Hb_008406_060--Hb_006651_030 Hb_008019_010 Hb_008019_010 Hb_008406_060--Hb_008019_010 Hb_018134_010 Hb_018134_010 Hb_008406_060--Hb_018134_010 Hb_161103_010--Hb_011909_050 Hb_161103_010--Hb_006651_030 Hb_001477_060 Hb_001477_060 Hb_161103_010--Hb_001477_060 Hb_007357_010 Hb_007357_010 Hb_161103_010--Hb_007357_010 Hb_000928_280 Hb_000928_280 Hb_161103_010--Hb_000928_280 Hb_000413_050 Hb_000413_050 Hb_000116_160--Hb_000413_050 Hb_005890_010 Hb_005890_010 Hb_000116_160--Hb_005890_010 Hb_005488_210 Hb_005488_210 Hb_000116_160--Hb_005488_210 Hb_000007_330 Hb_000007_330 Hb_000116_160--Hb_000007_330 Hb_001926_070 Hb_001926_070 Hb_000116_160--Hb_001926_070 Hb_009393_090 Hb_009393_090 Hb_011909_050--Hb_009393_090 Hb_000718_060 Hb_000718_060 Hb_011909_050--Hb_000718_060 Hb_011909_050--Hb_006651_030 Hb_001766_130 Hb_001766_130 Hb_011909_050--Hb_001766_130 Hb_029977_030 Hb_029977_030 Hb_006651_030--Hb_029977_030 Hb_008895_020 Hb_008895_020 Hb_006651_030--Hb_008895_020 Hb_006651_030--Hb_001766_130 Hb_008019_010--Hb_018134_010 Hb_054926_010 Hb_054926_010 Hb_008019_010--Hb_054926_010 Hb_004040_010 Hb_004040_010 Hb_008019_010--Hb_004040_010 Hb_059318_010 Hb_059318_010 Hb_008019_010--Hb_059318_010 Hb_111997_010 Hb_111997_010 Hb_008019_010--Hb_111997_010 Hb_000103_370 Hb_000103_370 Hb_008019_010--Hb_000103_370 Hb_018134_010--Hb_004040_010 Hb_018134_010--Hb_054926_010 Hb_018134_010--Hb_111997_010 Hb_001677_170 Hb_001677_170 Hb_018134_010--Hb_001677_170 Hb_018134_010--Hb_059318_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.201247 0.376951 0.325878 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.30134

CAGE analysis