Hb_005890_010

Information

Type -
Description -
Location Contig5890: 9577-11938
Sequence    

Annotation

kegg
ID egr:104414222
description root phototropism protein 2
nr
ID XP_012077861.1
description PREDICTED: root phototropism protein 2 [Jatropha curcas]
swissprot
ID Q682S0
description Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2
trembl
ID A0A067LEM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17285 PE=4 SV=1
Gene Ontology
ID GO:0044424
description root phototropism protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50112: 9998-11979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005890_010 0.0 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
2 Hb_000116_160 0.0733535137 transcription factor TF Family: RWP-RK hypothetical protein JCGZ_22391 [Jatropha curcas]
3 Hb_005488_210 0.0848350075 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
4 Hb_001926_070 0.089298236 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
5 Hb_004117_380 0.0895554292 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
6 Hb_000343_050 0.0904272024 - - conserved hypothetical protein [Ricinus communis]
7 Hb_032731_010 0.0934936231 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
8 Hb_000007_330 0.0972571964 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
9 Hb_001677_170 0.0981088428 - - hypothetical protein M569_03661, partial [Genlisea aurea]
10 Hb_000413_050 0.1026882537 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
11 Hb_007007_100 0.1045387298 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
12 Hb_059318_010 0.1097831757 - - glutamate receptor 2 plant, putative [Ricinus communis]
13 Hb_000890_170 0.1105002469 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
14 Hb_000732_300 0.1106265423 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
15 Hb_001606_010 0.113563466 - - kinase, putative [Ricinus communis]
16 Hb_000413_190 0.1138705741 - - PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Pyrus x bretschneideri]
17 Hb_059429_010 0.1165332647 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
18 Hb_000243_290 0.11787041 - - plastidic aldolase family protein [Populus trichocarpa]
19 Hb_111997_010 0.1210730931 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
20 Hb_074966_010 0.1248161234 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_005890_010 Hb_005890_010 Hb_000116_160 Hb_000116_160 Hb_005890_010--Hb_000116_160 Hb_005488_210 Hb_005488_210 Hb_005890_010--Hb_005488_210 Hb_001926_070 Hb_001926_070 Hb_005890_010--Hb_001926_070 Hb_004117_380 Hb_004117_380 Hb_005890_010--Hb_004117_380 Hb_000343_050 Hb_000343_050 Hb_005890_010--Hb_000343_050 Hb_032731_010 Hb_032731_010 Hb_005890_010--Hb_032731_010 Hb_000413_050 Hb_000413_050 Hb_000116_160--Hb_000413_050 Hb_008406_060 Hb_008406_060 Hb_000116_160--Hb_008406_060 Hb_000116_160--Hb_005488_210 Hb_000007_330 Hb_000007_330 Hb_000116_160--Hb_000007_330 Hb_000116_160--Hb_001926_070 Hb_005488_210--Hb_000007_330 Hb_007007_100 Hb_007007_100 Hb_005488_210--Hb_007007_100 Hb_005488_210--Hb_000413_050 Hb_000236_130 Hb_000236_130 Hb_005488_210--Hb_000236_130 Hb_004346_050 Hb_004346_050 Hb_005488_210--Hb_004346_050 Hb_001606_010 Hb_001606_010 Hb_001926_070--Hb_001606_010 Hb_001926_070--Hb_000007_330 Hb_001926_070--Hb_032731_010 Hb_001677_170 Hb_001677_170 Hb_001926_070--Hb_001677_170 Hb_000890_170 Hb_000890_170 Hb_001926_070--Hb_000890_170 Hb_010136_010 Hb_010136_010 Hb_001926_070--Hb_010136_010 Hb_001369_340 Hb_001369_340 Hb_004117_380--Hb_001369_340 Hb_000025_700 Hb_000025_700 Hb_004117_380--Hb_000025_700 Hb_003209_150 Hb_003209_150 Hb_004117_380--Hb_003209_150 Hb_004017_030 Hb_004017_030 Hb_004117_380--Hb_004017_030 Hb_004117_380--Hb_005488_210 Hb_000343_050--Hb_001677_170 Hb_006188_020 Hb_006188_020 Hb_000343_050--Hb_006188_020 Hb_000343_050--Hb_001926_070 Hb_000343_050--Hb_032731_010 Hb_111997_010 Hb_111997_010 Hb_000343_050--Hb_111997_010 Hb_059318_010 Hb_059318_010 Hb_032731_010--Hb_059318_010 Hb_074966_010 Hb_074966_010 Hb_032731_010--Hb_074966_010 Hb_001926_020 Hb_001926_020 Hb_032731_010--Hb_001926_020 Hb_003777_120 Hb_003777_120 Hb_032731_010--Hb_003777_120 Hb_032731_010--Hb_001606_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.441 33.9739 14.126 0.0240103 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109091 0 0 0.0256562 21.151

CAGE analysis