Hb_032731_010

Information

Type -
Description -
Location Contig32731: 13124-13747
Sequence    

Annotation

kegg
ID rcu:RCOM_1315080
description RING-H2 finger protein ATL5M precursor, putative
nr
ID XP_002518964.1
description RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
swissprot
ID Q9FGJ6
description RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2 SV=1
trembl
ID B9RYZ5
description RING-H2 finger protein ATL5M, putative OS=Ricinus communis GN=RCOM_1315080 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl79-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34438: 13044-13917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032731_010 0.0 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
2 Hb_059318_010 0.0602891394 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_074966_010 0.0694244028 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
4 Hb_001926_020 0.0707020424 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
5 Hb_001926_070 0.0732911987 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
6 Hb_003777_120 0.0796062349 - - -
7 Hb_001606_010 0.0850931485 - - kinase, putative [Ricinus communis]
8 Hb_000890_170 0.0887361444 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
9 Hb_059429_010 0.0917361032 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
10 Hb_005890_010 0.0934936231 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
11 Hb_000343_050 0.0957151568 - - conserved hypothetical protein [Ricinus communis]
12 Hb_111997_010 0.098010346 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
13 Hb_000049_030 0.101389948 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000236_130 0.1039506389 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
15 Hb_000007_330 0.1040355537 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
16 Hb_006501_080 0.1052936937 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
17 Hb_000243_290 0.1070942316 - - plastidic aldolase family protein [Populus trichocarpa]
18 Hb_004202_030 0.1085999942 - - PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]
19 Hb_006188_020 0.1130192996 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
20 Hb_001983_040 0.114044893 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]

Gene co-expression network

sample Hb_032731_010 Hb_032731_010 Hb_059318_010 Hb_059318_010 Hb_032731_010--Hb_059318_010 Hb_074966_010 Hb_074966_010 Hb_032731_010--Hb_074966_010 Hb_001926_020 Hb_001926_020 Hb_032731_010--Hb_001926_020 Hb_001926_070 Hb_001926_070 Hb_032731_010--Hb_001926_070 Hb_003777_120 Hb_003777_120 Hb_032731_010--Hb_003777_120 Hb_001606_010 Hb_001606_010 Hb_032731_010--Hb_001606_010 Hb_059318_010--Hb_074966_010 Hb_059318_010--Hb_001926_020 Hb_059318_010--Hb_003777_120 Hb_008019_010 Hb_008019_010 Hb_059318_010--Hb_008019_010 Hb_000049_030 Hb_000049_030 Hb_059318_010--Hb_000049_030 Hb_074966_010--Hb_001926_020 Hb_111997_010 Hb_111997_010 Hb_074966_010--Hb_111997_010 Hb_074966_010--Hb_003777_120 Hb_005888_050 Hb_005888_050 Hb_074966_010--Hb_005888_050 Hb_001926_020--Hb_003777_120 Hb_001926_020--Hb_005888_050 Hb_006188_020 Hb_006188_020 Hb_001926_020--Hb_006188_020 Hb_001926_070--Hb_001606_010 Hb_000007_330 Hb_000007_330 Hb_001926_070--Hb_000007_330 Hb_001677_170 Hb_001677_170 Hb_001926_070--Hb_001677_170 Hb_000890_170 Hb_000890_170 Hb_001926_070--Hb_000890_170 Hb_010136_010 Hb_010136_010 Hb_001926_070--Hb_010136_010 Hb_000199_040 Hb_000199_040 Hb_003777_120--Hb_000199_040 Hb_000002_370 Hb_000002_370 Hb_003777_120--Hb_000002_370 Hb_001606_010--Hb_000890_170 Hb_001352_030 Hb_001352_030 Hb_001606_010--Hb_001352_030 Hb_000486_020 Hb_000486_020 Hb_001606_010--Hb_000486_020 Hb_003531_050 Hb_003531_050 Hb_001606_010--Hb_003531_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.76676 6.53658 2.29624 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.153248 2.9169

CAGE analysis