Hb_006188_020

Information

Type -
Description -
Location Contig6188: 57517-57801
Sequence    

Annotation

kegg
ID rcu:RCOM_1677050
description hypothetical protein
nr
ID XP_012087648.1
description PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25169 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51349: 57308-57831
cDNA
(Sanger)
(ID:Location)		 027_G24.ab1: 57308-57831 , 039_F17.ab1: 57330-57830 , 041_N05.ab1: 57308-57831 , 052_G10.ab1: 57313-57831 , 052_K12.ab1: 57313-57831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006188_020 0.0 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
2 Hb_111997_010 0.0761596129 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
3 Hb_074966_010 0.0839261915 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
4 Hb_000343_050 0.0892234596 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001677_170 0.0896775787 - - hypothetical protein M569_03661, partial [Genlisea aurea]
6 Hb_001926_020 0.0956618266 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
7 Hb_005888_050 0.1014240959 - - ATP binding protein, putative [Ricinus communis]
8 Hb_018134_010 0.1075683314 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
9 Hb_001606_010 0.1081783198 - - kinase, putative [Ricinus communis]
10 Hb_008202_010 0.1084854679 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_001926_070 0.1105425775 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
12 Hb_001352_030 0.1105664062 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
13 Hb_005486_020 0.1106834787 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
14 Hb_032731_010 0.1130192996 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
15 Hb_000265_170 0.1149610566 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
16 Hb_059318_010 0.1152946417 - - glutamate receptor 2 plant, putative [Ricinus communis]
17 Hb_003777_120 0.1176377176 - - -
18 Hb_002477_200 0.1208278672 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
19 Hb_008019_010 0.1215418318 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
20 Hb_003531_050 0.1230230636 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006188_020 Hb_006188_020 Hb_111997_010 Hb_111997_010 Hb_006188_020--Hb_111997_010 Hb_074966_010 Hb_074966_010 Hb_006188_020--Hb_074966_010 Hb_000343_050 Hb_000343_050 Hb_006188_020--Hb_000343_050 Hb_001677_170 Hb_001677_170 Hb_006188_020--Hb_001677_170 Hb_001926_020 Hb_001926_020 Hb_006188_020--Hb_001926_020 Hb_005888_050 Hb_005888_050 Hb_006188_020--Hb_005888_050 Hb_111997_010--Hb_074966_010 Hb_111997_010--Hb_001677_170 Hb_001606_010 Hb_001606_010 Hb_111997_010--Hb_001606_010 Hb_059318_010 Hb_059318_010 Hb_111997_010--Hb_059318_010 Hb_001926_070 Hb_001926_070 Hb_111997_010--Hb_001926_070 Hb_074966_010--Hb_001926_020 Hb_074966_010--Hb_059318_010 Hb_003777_120 Hb_003777_120 Hb_074966_010--Hb_003777_120 Hb_032731_010 Hb_032731_010 Hb_074966_010--Hb_032731_010 Hb_074966_010--Hb_005888_050 Hb_000343_050--Hb_001677_170 Hb_005890_010 Hb_005890_010 Hb_000343_050--Hb_005890_010 Hb_000343_050--Hb_001926_070 Hb_000343_050--Hb_032731_010 Hb_000343_050--Hb_111997_010 Hb_001677_170--Hb_001926_070 Hb_000031_320 Hb_000031_320 Hb_001677_170--Hb_000031_320 Hb_001677_170--Hb_001606_010 Hb_001926_020--Hb_059318_010 Hb_001926_020--Hb_032731_010 Hb_001926_020--Hb_003777_120 Hb_001926_020--Hb_005888_050 Hb_135714_010 Hb_135714_010 Hb_005888_050--Hb_135714_010 Hb_008202_010 Hb_008202_010 Hb_005888_050--Hb_008202_010 Hb_031685_010 Hb_031685_010 Hb_005888_050--Hb_031685_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.507371 102.376 222.127 79.9562 0 2.56818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.39912 10.8457 141.347

CAGE analysis