Hb_135714_010

Information

Type -
Description -
Location Contig135714: 2973-6032
Sequence    

Annotation

kegg
ID pop:POPTR_0017s09310g
description hypothetical protein
nr
ID XP_006373170.1
description hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
swissprot
ID Q9SHV1
description Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1
trembl
ID U5FNM0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s09310g PE=4 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09948: 2892-6029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135714_010 0.0 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
2 Hb_005888_050 0.0612456657 - - ATP binding protein, putative [Ricinus communis]
3 Hb_008202_010 0.0946909111 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_074966_010 0.1125446112 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_005227_030 0.1199749398 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
6 Hb_031685_010 0.1241650389 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_000343_050 0.1241756582 - - conserved hypothetical protein [Ricinus communis]
8 Hb_023904_010 0.1285223902 - - -
9 Hb_006188_020 0.1313422653 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
10 Hb_001926_020 0.131683926 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
11 Hb_001953_110 0.1333555095 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
12 Hb_111997_010 0.1387788162 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
13 Hb_003349_020 0.1404313524 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
14 Hb_101133_040 0.141645208 - - PREDICTED: nudix hydrolase 18, mitochondrial-like [Jatropha curcas]
15 Hb_003970_010 0.1423528344 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
16 Hb_000340_380 0.1443515692 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
17 Hb_002477_200 0.1443679213 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
18 Hb_002030_020 0.146849774 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
19 Hb_065256_010 0.1469924738 - - tryptophan synthase beta chain, putative [Ricinus communis]
20 Hb_026016_010 0.1470786305 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_135714_010 Hb_135714_010 Hb_005888_050 Hb_005888_050 Hb_135714_010--Hb_005888_050 Hb_008202_010 Hb_008202_010 Hb_135714_010--Hb_008202_010 Hb_074966_010 Hb_074966_010 Hb_135714_010--Hb_074966_010 Hb_005227_030 Hb_005227_030 Hb_135714_010--Hb_005227_030 Hb_031685_010 Hb_031685_010 Hb_135714_010--Hb_031685_010 Hb_000343_050 Hb_000343_050 Hb_135714_010--Hb_000343_050 Hb_005888_050--Hb_074966_010 Hb_001926_020 Hb_001926_020 Hb_005888_050--Hb_001926_020 Hb_005888_050--Hb_008202_010 Hb_005888_050--Hb_031685_010 Hb_006188_020 Hb_006188_020 Hb_005888_050--Hb_006188_020 Hb_029584_110 Hb_029584_110 Hb_008202_010--Hb_029584_110 Hb_003970_010 Hb_003970_010 Hb_008202_010--Hb_003970_010 Hb_002596_090 Hb_002596_090 Hb_008202_010--Hb_002596_090 Hb_111997_010 Hb_111997_010 Hb_008202_010--Hb_111997_010 Hb_074966_010--Hb_001926_020 Hb_059318_010 Hb_059318_010 Hb_074966_010--Hb_059318_010 Hb_074966_010--Hb_111997_010 Hb_003777_120 Hb_003777_120 Hb_074966_010--Hb_003777_120 Hb_032731_010 Hb_032731_010 Hb_074966_010--Hb_032731_010 Hb_004109_140 Hb_004109_140 Hb_005227_030--Hb_004109_140 Hb_000386_010 Hb_000386_010 Hb_005227_030--Hb_000386_010 Hb_005305_140 Hb_005305_140 Hb_005227_030--Hb_005305_140 Hb_005888_060 Hb_005888_060 Hb_005227_030--Hb_005888_060 Hb_001953_110 Hb_001953_110 Hb_005227_030--Hb_001953_110 Hb_023904_010 Hb_023904_010 Hb_005227_030--Hb_023904_010 Hb_006789_030 Hb_006789_030 Hb_031685_010--Hb_006789_030 Hb_029095_010 Hb_029095_010 Hb_031685_010--Hb_029095_010 Hb_000732_160 Hb_000732_160 Hb_031685_010--Hb_000732_160 Hb_003337_020 Hb_003337_020 Hb_031685_010--Hb_003337_020 Hb_094439_010 Hb_094439_010 Hb_031685_010--Hb_094439_010 Hb_001677_170 Hb_001677_170 Hb_000343_050--Hb_001677_170 Hb_000343_050--Hb_006188_020 Hb_005890_010 Hb_005890_010 Hb_000343_050--Hb_005890_010 Hb_001926_070 Hb_001926_070 Hb_000343_050--Hb_001926_070 Hb_000343_050--Hb_032731_010 Hb_000343_050--Hb_111997_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 19.4526 41.5434 6.44194 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0646133 0.0254223 0 0.918141 21.1668

CAGE analysis