Hb_005227_030

Information

Type -
Description -
Location Contig5227: 35239-37111
Sequence    

Annotation

kegg
ID rcu:RCOM_0702480
description peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8)
nr
ID XP_012071424.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
swissprot
ID O65220
description Peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic OS=Arabidopsis thaliana GN=CYP28 PE=1 SV=1
trembl
ID A0A067KQX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03969 PE=3 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46861: 35019-37242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005227_030 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
2 Hb_004109_140 0.0737415731 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000386_010 0.0876128685 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005305_140 0.0929236976 - - unknown [Populus trichocarpa]
5 Hb_005888_060 0.0956451425 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
6 Hb_001953_110 0.0960253331 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
7 Hb_023904_010 0.0972423406 - - -
8 Hb_000483_470 0.0987886936 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_000343_050 0.1050351725 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007254_010 0.1056664781 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
11 Hb_003767_060 0.1092800855 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
12 Hb_000834_170 0.1094814375 - - polygalacturonase, putative [Ricinus communis]
13 Hb_003777_090 0.1125245514 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
14 Hb_006106_010 0.1184086568 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
15 Hb_000025_700 0.1196573837 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
16 Hb_001369_340 0.1197614565 - - Peroxisomal membrane protein 11B [Theobroma cacao]
17 Hb_135714_010 0.1199749398 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
18 Hb_004346_050 0.1206127688 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
19 Hb_002010_030 0.1223125281 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
20 Hb_000928_100 0.1234308452 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]

Gene co-expression network

sample Hb_005227_030 Hb_005227_030 Hb_004109_140 Hb_004109_140 Hb_005227_030--Hb_004109_140 Hb_000386_010 Hb_000386_010 Hb_005227_030--Hb_000386_010 Hb_005305_140 Hb_005305_140 Hb_005227_030--Hb_005305_140 Hb_005888_060 Hb_005888_060 Hb_005227_030--Hb_005888_060 Hb_001953_110 Hb_001953_110 Hb_005227_030--Hb_001953_110 Hb_023904_010 Hb_023904_010 Hb_005227_030--Hb_023904_010 Hb_004109_140--Hb_005305_140 Hb_000834_170 Hb_000834_170 Hb_004109_140--Hb_000834_170 Hb_004109_140--Hb_000386_010 Hb_001864_050 Hb_001864_050 Hb_004109_140--Hb_001864_050 Hb_000483_470 Hb_000483_470 Hb_004109_140--Hb_000483_470 Hb_000386_010--Hb_005305_140 Hb_000928_100 Hb_000928_100 Hb_000386_010--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_000386_010--Hb_022167_010 Hb_000386_010--Hb_005888_060 Hb_001662_090 Hb_001662_090 Hb_000386_010--Hb_001662_090 Hb_005305_140--Hb_001864_050 Hb_002025_220 Hb_002025_220 Hb_005305_140--Hb_002025_220 Hb_005305_140--Hb_001662_090 Hb_005305_140--Hb_000834_170 Hb_005888_060--Hb_005305_140 Hb_002561_040 Hb_002561_040 Hb_005888_060--Hb_002561_040 Hb_007254_010 Hb_007254_010 Hb_005888_060--Hb_007254_010 Hb_005511_080 Hb_005511_080 Hb_005888_060--Hb_005511_080 Hb_001953_110--Hb_023904_010 Hb_001040_090 Hb_001040_090 Hb_001953_110--Hb_001040_090 Hb_002010_030 Hb_002010_030 Hb_001953_110--Hb_002010_030 Hb_001953_110--Hb_004109_140 Hb_002818_160 Hb_002818_160 Hb_001953_110--Hb_002818_160 Hb_023904_010--Hb_007254_010 Hb_000252_240 Hb_000252_240 Hb_023904_010--Hb_000252_240 Hb_003337_020 Hb_003337_020 Hb_023904_010--Hb_003337_020 Hb_023904_010--Hb_000386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 18.639 66.4874 10.043 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.423421 45.4991

CAGE analysis