Hb_003337_020

Information

Type -
Description -
Location Contig3337: 43286-44419
Sequence    

Annotation

kegg
ID pop:POPTR_0318s00200g
description hypothetical protein
nr
ID XP_011012131.1
description PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U7DVN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0318s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003337_020 0.0 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
2 Hb_000265_170 0.0906145094 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
3 Hb_063405_010 0.0959293584 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
4 Hb_000697_020 0.0996745304 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
5 Hb_001544_060 0.1036066222 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
6 Hb_005888_050 0.1058864626 - - ATP binding protein, putative [Ricinus communis]
7 Hb_001898_100 0.1070845252 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
8 Hb_031685_010 0.1074987414 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_000212_270 0.108980831 - - calreticulin, putative [Ricinus communis]
10 Hb_002030_090 0.1103902514 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_006789_030 0.1108784465 - - PREDICTED: wall-associated receptor kinase-like 22 [Prunus mume]
12 Hb_061126_010 0.111242863 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_001352_030 0.1117998167 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
14 Hb_005486_020 0.1134327061 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
15 Hb_007254_010 0.1145955955 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
16 Hb_023904_010 0.1172953913 - - -
17 Hb_001638_190 0.1178752526 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
18 Hb_003777_090 0.1180895003 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
19 Hb_000037_200 0.1194507514 - - RNA binding protein, putative [Ricinus communis]
20 Hb_000538_250 0.1205493556 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Jatropha curcas]

Gene co-expression network

sample Hb_003337_020 Hb_003337_020 Hb_000265_170 Hb_000265_170 Hb_003337_020--Hb_000265_170 Hb_063405_010 Hb_063405_010 Hb_003337_020--Hb_063405_010 Hb_000697_020 Hb_000697_020 Hb_003337_020--Hb_000697_020 Hb_001544_060 Hb_001544_060 Hb_003337_020--Hb_001544_060 Hb_005888_050 Hb_005888_050 Hb_003337_020--Hb_005888_050 Hb_001898_100 Hb_001898_100 Hb_003337_020--Hb_001898_100 Hb_001352_030 Hb_001352_030 Hb_000265_170--Hb_001352_030 Hb_000185_170 Hb_000185_170 Hb_000265_170--Hb_000185_170 Hb_003531_050 Hb_003531_050 Hb_000265_170--Hb_003531_050 Hb_111997_010 Hb_111997_010 Hb_000265_170--Hb_111997_010 Hb_001606_010 Hb_001606_010 Hb_000265_170--Hb_001606_010 Hb_003937_010 Hb_003937_010 Hb_063405_010--Hb_003937_010 Hb_003777_090 Hb_003777_090 Hb_063405_010--Hb_003777_090 Hb_000705_010 Hb_000705_010 Hb_063405_010--Hb_000705_010 Hb_001321_010 Hb_001321_010 Hb_063405_010--Hb_001321_010 Hb_000270_090 Hb_000270_090 Hb_063405_010--Hb_000270_090 Hb_063405_010--Hb_000697_020 Hb_061126_010 Hb_061126_010 Hb_000697_020--Hb_061126_010 Hb_016687_010 Hb_016687_010 Hb_000697_020--Hb_016687_010 Hb_001172_150 Hb_001172_150 Hb_000697_020--Hb_001172_150 Hb_000212_270 Hb_000212_270 Hb_000697_020--Hb_000212_270 Hb_000697_020--Hb_000705_010 Hb_000252_240 Hb_000252_240 Hb_001544_060--Hb_000252_240 Hb_000445_310 Hb_000445_310 Hb_001544_060--Hb_000445_310 Hb_003453_060 Hb_003453_060 Hb_001544_060--Hb_003453_060 Hb_001544_060--Hb_001898_100 Hb_001638_190 Hb_001638_190 Hb_001544_060--Hb_001638_190 Hb_135714_010 Hb_135714_010 Hb_005888_050--Hb_135714_010 Hb_074966_010 Hb_074966_010 Hb_005888_050--Hb_074966_010 Hb_001926_020 Hb_001926_020 Hb_005888_050--Hb_001926_020 Hb_008202_010 Hb_008202_010 Hb_005888_050--Hb_008202_010 Hb_031685_010 Hb_031685_010 Hb_005888_050--Hb_031685_010 Hb_006188_020 Hb_006188_020 Hb_005888_050--Hb_006188_020 Hb_001898_100--Hb_000212_270 Hb_006789_030 Hb_006789_030 Hb_001898_100--Hb_006789_030 Hb_000175_200 Hb_000175_200 Hb_001898_100--Hb_000175_200 Hb_001266_130 Hb_001266_130 Hb_001898_100--Hb_001266_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0474124 4.53106 14.5581 3.06666 0.0178027 0.0167078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.03416 0 1.64389 9.65357

CAGE analysis