Hb_000697_020

Information

Type -
Description -
Location Contig697: 27924-31166
Sequence    

Annotation

kegg
ID tcc:TCM_019784
description Zinc-binding dehydrogenase family protein isoform 1
nr
ID XP_007033621.1
description Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
swissprot
ID Q9SLN8
description 2-alkenal reductase (NADP(+)-dependent) OS=Nicotiana tabacum GN=DBR PE=1 SV=1
trembl
ID A0A061EJG6
description Zinc-binding dehydrogenase family protein isoform 1 OS=Theobroma cacao GN=TCM_019784 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54626: 27982-29302 , PASA_asmbl_54627: 28000-29302 , PASA_asmbl_54628: 28249-28611 , PASA_asmbl_54629: 29304-31322 , PASA_asmbl_54630: 29304-31322
cDNA
(Sanger)
(ID:Location)		 042_B06.ab1: 27982-29148 , 051_O18.ab1: 27982-29117

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000697_020 0.0 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
2 Hb_061126_010 0.0569100949 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_016687_010 0.0838524138 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
4 Hb_001172_150 0.0892962513 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
5 Hb_000212_270 0.0898318355 - - calreticulin, putative [Ricinus communis]
6 Hb_063405_010 0.0914016838 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
7 Hb_000705_010 0.0960716246 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
8 Hb_008878_020 0.0993957669 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
9 Hb_003337_020 0.0996745304 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
10 Hb_003119_130 0.1058593866 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
11 Hb_000037_200 0.1121474658 - - RNA binding protein, putative [Ricinus communis]
12 Hb_000120_490 0.1128182656 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
13 Hb_002890_160 0.1164056119 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
14 Hb_010584_020 0.1166995659 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_000265_170 0.1211433705 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
16 Hb_006478_050 0.1220140324 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
17 Hb_003777_090 0.1224076503 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
18 Hb_001321_010 0.1229931978 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
19 Hb_000345_400 0.1239902388 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002030_090 0.1263032101 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000697_020 Hb_000697_020 Hb_061126_010 Hb_061126_010 Hb_000697_020--Hb_061126_010 Hb_016687_010 Hb_016687_010 Hb_000697_020--Hb_016687_010 Hb_001172_150 Hb_001172_150 Hb_000697_020--Hb_001172_150 Hb_000212_270 Hb_000212_270 Hb_000697_020--Hb_000212_270 Hb_063405_010 Hb_063405_010 Hb_000697_020--Hb_063405_010 Hb_000705_010 Hb_000705_010 Hb_000697_020--Hb_000705_010 Hb_000120_490 Hb_000120_490 Hb_061126_010--Hb_000120_490 Hb_061126_010--Hb_000705_010 Hb_061126_010--Hb_063405_010 Hb_002010_030 Hb_002010_030 Hb_061126_010--Hb_002010_030 Hb_061126_010--Hb_001172_150 Hb_003119_130 Hb_003119_130 Hb_016687_010--Hb_003119_130 Hb_003141_060 Hb_003141_060 Hb_016687_010--Hb_003141_060 Hb_008878_020 Hb_008878_020 Hb_016687_010--Hb_008878_020 Hb_016687_010--Hb_001172_150 Hb_016687_010--Hb_061126_010 Hb_001172_150--Hb_003119_130 Hb_001172_150--Hb_008878_020 Hb_001172_150--Hb_000212_270 Hb_001172_150--Hb_000705_010 Hb_000212_270--Hb_008878_020 Hb_000175_200 Hb_000175_200 Hb_000212_270--Hb_000175_200 Hb_001898_100 Hb_001898_100 Hb_000212_270--Hb_001898_100 Hb_000212_270--Hb_003119_130 Hb_003937_010 Hb_003937_010 Hb_063405_010--Hb_003937_010 Hb_003777_090 Hb_003777_090 Hb_063405_010--Hb_003777_090 Hb_063405_010--Hb_000705_010 Hb_001321_010 Hb_001321_010 Hb_063405_010--Hb_001321_010 Hb_000270_090 Hb_000270_090 Hb_063405_010--Hb_000270_090 Hb_080922_010 Hb_080922_010 Hb_000705_010--Hb_080922_010 Hb_000705_010--Hb_000270_090 Hb_000705_010--Hb_001321_010 Hb_000705_010--Hb_002010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157141 3.29788 12.1288 2.88532 0.0170661 0.155057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0388653 0.0305729 0 1.59109 12.0454

CAGE analysis