Hb_016687_010

Information

Type -
Description -
Location Contig16687: 16674-20580
Sequence    

Annotation

kegg
ID sot:102599907
description uncharacterized LOC102599907
nr
ID XP_012076242.1
description PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12679 PE=4 SV=1
Gene Ontology
ID GO:0016020
description udp-3-o-acylglucosamine n-acyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15385: 16739-20646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016687_010 0.0 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
2 Hb_000697_020 0.0838524138 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
3 Hb_003119_130 0.0982920385 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
4 Hb_003141_060 0.1051005899 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
5 Hb_008878_020 0.1126279535 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
6 Hb_001172_150 0.1129595754 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
7 Hb_061126_010 0.1152572781 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
8 Hb_000483_430 0.1155599732 - - -
9 Hb_010584_020 0.1160812691 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_000968_010 0.1169011969 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
11 Hb_000037_200 0.1199601319 - - RNA binding protein, putative [Ricinus communis]
12 Hb_005976_090 0.122986523 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000917_200 0.123828544 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
14 Hb_011104_020 0.1274971298 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
15 Hb_000212_270 0.1290266916 - - calreticulin, putative [Ricinus communis]
16 Hb_006478_050 0.1292966072 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
17 Hb_001508_030 0.1302156484 - - hypothetical protein VITISV_029808 [Vitis vinifera]
18 Hb_000705_010 0.1321698317 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
19 Hb_002890_160 0.1340018719 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
20 Hb_001227_140 0.1353370344 - - PREDICTED: protein ROS1 [Jatropha curcas]

Gene co-expression network

sample Hb_016687_010 Hb_016687_010 Hb_000697_020 Hb_000697_020 Hb_016687_010--Hb_000697_020 Hb_003119_130 Hb_003119_130 Hb_016687_010--Hb_003119_130 Hb_003141_060 Hb_003141_060 Hb_016687_010--Hb_003141_060 Hb_008878_020 Hb_008878_020 Hb_016687_010--Hb_008878_020 Hb_001172_150 Hb_001172_150 Hb_016687_010--Hb_001172_150 Hb_061126_010 Hb_061126_010 Hb_016687_010--Hb_061126_010 Hb_000697_020--Hb_061126_010 Hb_000697_020--Hb_001172_150 Hb_000212_270 Hb_000212_270 Hb_000697_020--Hb_000212_270 Hb_063405_010 Hb_063405_010 Hb_000697_020--Hb_063405_010 Hb_000705_010 Hb_000705_010 Hb_000697_020--Hb_000705_010 Hb_078582_010 Hb_078582_010 Hb_003119_130--Hb_078582_010 Hb_003453_060 Hb_003453_060 Hb_003119_130--Hb_003453_060 Hb_000175_200 Hb_000175_200 Hb_003119_130--Hb_000175_200 Hb_003119_130--Hb_001172_150 Hb_005575_010 Hb_005575_010 Hb_003119_130--Hb_005575_010 Hb_000968_010 Hb_000968_010 Hb_003141_060--Hb_000968_010 Hb_001227_140 Hb_001227_140 Hb_003141_060--Hb_001227_140 Hb_003915_020 Hb_003915_020 Hb_003141_060--Hb_003915_020 Hb_000002_300 Hb_000002_300 Hb_003141_060--Hb_000002_300 Hb_000948_120 Hb_000948_120 Hb_003141_060--Hb_000948_120 Hb_008878_020--Hb_000212_270 Hb_002030_090 Hb_002030_090 Hb_008878_020--Hb_002030_090 Hb_008878_020--Hb_000697_020 Hb_008878_020--Hb_001172_150 Hb_001266_130 Hb_001266_130 Hb_008878_020--Hb_001266_130 Hb_006478_050 Hb_006478_050 Hb_008878_020--Hb_006478_050 Hb_001172_150--Hb_000212_270 Hb_001172_150--Hb_061126_010 Hb_001172_150--Hb_000705_010 Hb_000120_490 Hb_000120_490 Hb_061126_010--Hb_000120_490 Hb_061126_010--Hb_000705_010 Hb_061126_010--Hb_063405_010 Hb_002010_030 Hb_002010_030 Hb_061126_010--Hb_002010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.5822 31.4538 139.382 42.9241 3.07848 3.31777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.199467 0.0896755 0 28.2574 161.903

CAGE analysis