Hb_002030_090

Information

Type -
Description -
Location Contig2030: 119885-123993
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14390g
description POPTRDRAFT_655493; hypothetical protein
nr
ID XP_012081634.1
description PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067KBY2
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_18675 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_090 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
2 Hb_008878_020 0.0920606657 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
3 Hb_093364_010 0.1028997364 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
4 Hb_001579_060 0.1034549329 - - carbonic anhydrase, putative [Ricinus communis]
5 Hb_000987_020 0.1044391072 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
6 Hb_000037_200 0.1077124311 - - RNA binding protein, putative [Ricinus communis]
7 Hb_029095_010 0.1086410815 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
8 Hb_000265_170 0.1087815644 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
9 Hb_003337_020 0.1103902514 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
10 Hb_171168_010 0.110958359 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
11 Hb_001172_150 0.1119681424 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
12 Hb_078582_010 0.1129415818 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
13 Hb_000185_170 0.1135782883 - - ATP binding protein, putative [Ricinus communis]
14 Hb_001501_020 0.1140860388 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
15 Hb_007113_020 0.1179911454 - - -
16 Hb_094439_010 0.1208256343 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
17 Hb_000212_270 0.1208947985 - - calreticulin, putative [Ricinus communis]
18 Hb_000020_020 0.1211060376 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
19 Hb_001266_130 0.1240700413 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
20 Hb_010904_010 0.1261971648 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002030_090 Hb_002030_090 Hb_008878_020 Hb_008878_020 Hb_002030_090--Hb_008878_020 Hb_093364_010 Hb_093364_010 Hb_002030_090--Hb_093364_010 Hb_001579_060 Hb_001579_060 Hb_002030_090--Hb_001579_060 Hb_000987_020 Hb_000987_020 Hb_002030_090--Hb_000987_020 Hb_000037_200 Hb_000037_200 Hb_002030_090--Hb_000037_200 Hb_029095_010 Hb_029095_010 Hb_002030_090--Hb_029095_010 Hb_000212_270 Hb_000212_270 Hb_008878_020--Hb_000212_270 Hb_000697_020 Hb_000697_020 Hb_008878_020--Hb_000697_020 Hb_001172_150 Hb_001172_150 Hb_008878_020--Hb_001172_150 Hb_001266_130 Hb_001266_130 Hb_008878_020--Hb_001266_130 Hb_006478_050 Hb_006478_050 Hb_008878_020--Hb_006478_050 Hb_093364_010--Hb_029095_010 Hb_000990_040 Hb_000990_040 Hb_093364_010--Hb_000990_040 Hb_004611_050 Hb_004611_050 Hb_093364_010--Hb_004611_050 Hb_000020_020 Hb_000020_020 Hb_093364_010--Hb_000020_020 Hb_005486_020 Hb_005486_020 Hb_093364_010--Hb_005486_020 Hb_000185_170 Hb_000185_170 Hb_093364_010--Hb_000185_170 Hb_006827_030 Hb_006827_030 Hb_001579_060--Hb_006827_030 Hb_000694_050 Hb_000694_050 Hb_001579_060--Hb_000694_050 Hb_001579_060--Hb_000987_020 Hb_001883_010 Hb_001883_010 Hb_001579_060--Hb_001883_010 Hb_000680_130 Hb_000680_130 Hb_001579_060--Hb_000680_130 Hb_000968_010 Hb_000968_010 Hb_001579_060--Hb_000968_010 Hb_002078_320 Hb_002078_320 Hb_000987_020--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_000987_020--Hb_000901_010 Hb_000987_020--Hb_000185_170 Hb_000987_020--Hb_000694_050 Hb_000987_020--Hb_000037_200 Hb_000037_200--Hb_000185_170 Hb_000062_050 Hb_000062_050 Hb_000037_200--Hb_000062_050 Hb_078582_010 Hb_078582_010 Hb_000037_200--Hb_078582_010 Hb_000023_130 Hb_000023_130 Hb_000037_200--Hb_000023_130 Hb_002890_160 Hb_002890_160 Hb_000037_200--Hb_002890_160 Hb_029095_010--Hb_005486_020 Hb_029095_010--Hb_000990_040 Hb_002596_090 Hb_002596_090 Hb_029095_010--Hb_002596_090 Hb_031685_010 Hb_031685_010 Hb_029095_010--Hb_031685_010 Hb_029095_010--Hb_004611_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.2706 11.9711 3.22495 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11005 0.0216461 0 3.20099 10.9611

CAGE analysis